Pseudonocardia autotrophica: Pdca_33820
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Entry
Pdca_33820 CDS
T06156
Symbol
helY
Name
(GenBank) ATP-dependent RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
paut
Pseudonocardia autotrophica
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paut03019
]
Pdca_33820 (helY)
Enzymes [BR:
paut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pdca_33820 (helY)
Messenger RNA biogenesis [BR:
paut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pdca_33820 (helY)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
nSTAND3
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBG02173
LinkDB
All DBs
Position
3544891..3547836
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AA seq
981 aa
AA seq
DB search
MSTRAGSSDPAAAYAAAKARAAHPRLAEFTGLLPFELDGFQRDACEALEDGHGVLLCAPT
GAGKTVAGEFAVHLALSEGRKCFYTTPIKALSNQKYADLVDRYGADAVGLLTGDTAVNGD
AQVVVMTTEVLRNMIYADSDAAANRRLDHLGYVVMDEVHYLADRFRGAVWEEVILQLPEH
VAVVGLSATVSNAEEFGDWLVEVRGDTTVVVDEHRPVPLWQHMMVGNRLFDLFGERTPGA
GPAELAVDPDLVRYTREMQRRDVTGSRAADRAGDRGPRHGGGRGRGGPRDRNRTRGGRDA
RNDSTAVVGRGPRPGGPGWPGGFRPPSRVQVIDRLNREGLLPAITFVFSRAGCEAAVGQC
VRSGIRLTEPDEVEEIRRIVEKHTGDLPQDDLGVLGYWEWREALERGVAAHHAGLLPSFK
ETVEELFVAGLVRCVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRA
GRRGIDVEGHAVVLWAPGMDPEQVAGLASTRTYPLHSSFRPVYNMSVNLVGRLGTDAARE
LLERSFGQFQADRSVVGLARRIDRNAEALAGYRESMTCHLGDFAEYADLRRRLSEREKSL
RRQNTAVAREETAESLRELRPGDVIAIPSGRRAGIAVVLDPGVGALSANGRDDPEPRPLV
CTEDRWAGRLSAADFPGVVEVLGRIKLPRRVEHRSPQVRRDLASSLRNSRIRPTDGAGRR
GKHGVQDDPELVTLRRALRVHPCHGCDDREAHARWAERYQRLERETESLRQKVRATTNSL
ARAFDRIRALLSERGYLVPAEEAGAGEDEVTAHGRVLARLWGESDLLAAECLRHGAWDGL
EPDELAAVVSALVYESRRDDAPMPRLPTGPVADALERTVGLWDELDADQRRHKAERTRAP
DLAFAWPMHRWARGESLAQVLEAAERNGHELSAGDFVRWARQVLDLLDQIAGVAGRSSGV
GRAAHRASGAVRRGVVAAGMQ
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacccgtgcagggagcagtgacccggccgccgcctacgcggcggcgaaggcccgg
gcggcgcatccccgactcgccgagttcaccggcctgctgccgttcgagctggacggtttc
cagcgggacgcctgcgaggccctggaggacgggcacggcgtgttgctgtgtgcgcccacc
ggcgccgggaagacggtcgccggcgagttcgcggtgcacctggcgctctccgagggccgc
aagtgcttctacaccaccccgatcaaggcgctgtcgaaccagaagtacgccgatctcgtc
gaccgctacggcgccgacgcggtcggcctgctgaccggcgacacagccgtcaacggggac
gcacaggtggtcgtgatgaccaccgaggtgctccggaacatgatctacgccgactccgat
gccgcggcgaaccgccggctcgaccacctcggctacgtcgtgatggacgaggtgcactac
ctcgccgaccggttccgcggcgcggtctgggaggaggtcatcctccagctgcccgagcac
gtcgccgtggtcgggctgtcggcgacggtgagcaacgccgaggagttcggcgactggctg
gtcgaggtgcgcggcgacaccaccgtggtcgtcgacgagcaccggccggtcccgctgtgg
cagcacatgatggtcggcaaccggctgttcgacctgttcggtgagcgcacgccgggcgcc
gggccggcggagctcgccgtcgatccggatctggtccgctacacccgggagatgcagcgg
cgggatgtcaccggatcacgggccgccgaccgggccggggatcgtggcccgcggcacggt
ggcgggcggggccgcggcgggccgcgggaccgtaaccgcacccgcggcgggcgcgacgcc
cgcaacgactcgaccgccgtcgtcgggcgcggcccgcggcccggtggccccggctggccc
ggtgggttccggccgccgtcgcgggtgcaggtgatcgaccggctgaaccgggaggggctg
ctcccggcgatcacgttcgtgttctcgcgggccgggtgcgaggccgccgtcggacagtgt
gtgcggtccggcatccggctcaccgagcccgacgaggtcgaggagatccgccggatcgtc
gagaagcacaccggtgacctcccgcaggacgatctcggcgtgctcgggtactgggagtgg
cgggaggccctcgaacgcggcgtcgccgcccaccacgccgggctgctgccgtcgttcaag
gagaccgtcgaggagctgttcgtcgccggcctggtgcggtgcgtcttcgcgaccgagacc
ctggcgctgggcatcaacatgccggcccgcaccgtggtgctggagcggctcgtcaagtac
aacggcgaggcacacgtcgacctgaccccgggggagtacacccagctcaccggccgggcc
gggcggcgcgggatcgacgtcgaggggcacgcggtcgtgctgtgggcgcccggtatggat
ccggagcaggtcgccgggctggcgtccacccggacctacccgctgcacagctcgttccgc
ccggtctacaacatgtcggtcaacctggtcgggaggctcggcaccgacgccgcccgcgag
ctgctggagcgctcgttcgggcagttccaggcagaccgctcggtggtcggcctggcccgc
cggatcgaccgcaacgccgaggcgctcgcgggctaccgggagtcgatgacctgtcatctc
ggcgacttcgccgagtacgccgacctgcgcaggcggctcagcgagcgggagaagtcgctg
cgcaggcagaacaccgccgtcgcgcgggaggagaccgccgagtcgctgcgcgagctgcgc
cccggcgacgtgatcgccatcccgtccggcaggcgggccgggatcgcggtcgtcctcgac
ccgggggtgggtgcgttgtcggcgaacggccgcgacgaccccgagccgcggccgctggtg
tgcaccgaggaccggtgggcgggcaggctgtccgctgcggacttcccgggcgtggtcgag
gtgctgggccggatcaagctgccccggcgggtcgagcaccgctccccgcaggtccgccgt
gatctcgcgtcgtcgctgcggaactcccgcatccgcccgaccgacggcgccggccgtcgg
ggcaagcacggcgtgcaggacgatcccgagttggtcacgctgcgccgggcgctgcgggta
catccctgccacgggtgcgacgaccgggaggcgcacgcccggtgggccgagcggtaccag
cggctggaacgtgagaccgagtcgctgcggcagaaggtccgcgcgacgacgaactcgctg
gcgcgggccttcgaccggatccgggcgctgctctccgagcgcggctacctggtcccggcg
gaggaggcgggcgccggcgaggacgaggtgaccgcgcacggccgggtgctcgcccggctg
tggggcgagtccgatctgctcgctgcggagtgcctgcggcacggagcctgggacggtctc
gaacccgacgagctggcggccgtggtgtcggcgctggtgtacgagtcgcgccgggacgac
gcgccgatgccgcggctgcccaccgggccggtggccgacgcgctggagcggaccgtcggc
ttgtgggacgagctggacgccgaccagcgcaggcacaaggccgagcgcacccgggccccc
gatctggcgttcgcctggccgatgcaccgctgggcgcgcggggagtccctcgcacaggtt
ctggaggccgccgaacgcaacgggcacgagctgtccgcgggcgacttcgtacgctgggcc
cgacaggtgctcgacctgctcgaccagatcgccggtgtcgccggccggtcgagcggcgtc
gggcgggccgcgcaccgggcgtccggtgcggtgcgccgcggcgtcgtcgcggccggcatg
caatga
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