Pseudonocardia autotrophica: Pdca_41830
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Entry
Pdca_41830 CDS
T06156
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paut
Pseudonocardia autotrophica
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paut03016
]
Pdca_41830 (rnd)
Enzymes [BR:
paut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pdca_41830 (rnd)
Transfer RNA biogenesis [BR:
paut03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pdca_41830 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
BBG02974
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All DBs
Position
4407539..4408789
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AA seq
416 aa
AA seq
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MRTTGGTETRPPGHPSPDDSPDPVPLLSPADGLPEVTASPDALAEVADRLAGGTGPIAVD
AERASGFRYSQRAYLVQLRRAGSGSALVDPIPLRGALAPLATALDGPEWVLHAASQDLPC
LAEIDLLPGSLFDTELAGRLAGLPRVGLGPMVENLLGLSLEKGHGAADWSRRPLPEDWLV
YAALDVEVLIELRDVLAGLLEEQGKTEWARQEFEAVRTAPPPGPRAEPWRRTSGIHKVRR
PRPLAAARELWHARDTLAAERDIAPGRVLPDAAIVDAAVRNPESPQALAELPVFRGRSQR
RLARYWFDALRRAAELPESELPRGSAPSDGPPPVSRWADRDPDAAARLTAARAALATVSD
EHDIPVENLLQPDLLRRLCWTPPADGDVRGALAAGGARPWQADLLAPLLEPVLAPA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcggacgacaggcggtacggagacccggccgcccggtcatccgtccccggacgattca
cccgatccggttcccctgctcagtccggccgacggtctgcccgaggtgacggcgtctccg
gacgctctcgccgaggtggccgaccggctcgccgggggaaccggcccgatcgcggtcgac
gccgagcgcgcatccggattccgctactcgcagcgcgcctacctggtgcagctgcgacgg
gcgggctccggctcggcgctggtcgacccgatcccgctgcgcggtgcgctcgctcccctc
gccaccgcactcgacggtcccgaatgggtgctgcacgccgcgtcccaggacctgccctgc
ctcgccgagatcgatctgctccccggatcgctgttcgacaccgagctggccgggcggctg
gccgggctgccccgggtcggcctcggcccgatggtggagaacctgctgggactgtccctg
gagaagggccacggcgcggccgactggtcgcgccggccgctgccggaggactggctggtc
tatgccgcgctcgacgtcgaggtgctgatcgagctgcgcgacgtgctcgccggcctgctc
gaggagcagggcaagaccgaatgggcccgccaggagttcgaggccgtccgcaccgctccg
ccgccgggcccgcgtgccgaaccgtggcgccggacctccgggatccacaaggtgcgcagg
ccccggccgctggccgcggcccgcgagctgtggcacgccagggacactctcgccgccgag
cgggacatcgcacccggccgggtgctgccggatgcggcgatcgtcgacgcggccgtccgg
aacccggagtcgccgcaggcgctcgccgagctcccggtcttccgcggccggtcgcagcgc
cggctcgcccgctactggttcgacgcgctccgccgcgccgccgagctccccgagtccgag
ctgccccgcggctccgcgccgtcggacggtccgcccccggtgtcccggtgggccgatcgc
gacccggatgccgccgcccggctgaccgctgcgcgtgccgcactggccaccgtctccgac
gagcacgacatcccggtggagaacctgctgcaacccgatctcctgcgccggctgtgctgg
acaccgcccgccgacggcgacgtccgcggtgcactcgccgccggcggcgcccggccgtgg
caggccgatctgctggccccgctgctcgaaccggtcctcgcccccgcctga
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