Pseudonocardia autotrophica: Pdca_46960
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Entry
Pdca_46960 CDS
T06156
Symbol
holA
Name
(GenBank) hypothetical protein
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03030
DNA replication
paut03430
Mismatch repair
paut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pdca_46960 (holA)
03430 Mismatch repair
Pdca_46960 (holA)
03440 Homologous recombination
Pdca_46960 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paut03032
]
Pdca_46960 (holA)
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_46960 (holA)
Enzymes [BR:
paut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pdca_46960 (holA)
DNA replication proteins [BR:
paut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pdca_46960 (holA)
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pdca_46960 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
BBG03487
LinkDB
All DBs
Position
complement(4976937..4977914)
Genome browser
AA seq
325 aa
AA seq
DB search
MSRTRDAGPPAPLQLVVGDEEFLAERAVSELVRRIRQDDPEVELRRFRTSEVAPGELAGH
LSPSLFAESRVIVLTHAQDTTKDMLAAIAGYIKDPAPGIVLVALHAGGAKGKALVDLLKK
AGAQVTTCNRITRADERSDFVHAEVRRNGGSITPGALAVLVEAVGSDLRELASAAGQLVA
DTGGKIDEAGVRRYHRGRAESSGFAVADAAVAGDRRGALEALRWALVLGVPHVLIADALA
DSVRTLAKVGSAGRGDPNRLAGELGMPPWKIRKAQGVVRQWRPEQLAVAIAATARVNADV
KGVAADPAYALERAVLAVVEARVER
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaggacgcgtgacgccggaccgcccgcccccctgcagctggtggtgggcgacgag
gagttcctggccgaacgggcggtgtccgagctggtccgccggatccggcaggacgatccg
gaggtcgagctccgccggttccgcacctcggaggtcgcgcccggcgagctggcgggacac
ctcagcccgtcgctgttcgcggagagcagggtgattgtgctcacccatgcccaggacacg
acgaaggacatgctcgccgcgatcgccgggtacatcaaggatccggcaccggggatcgtc
ctggttgcgctgcacgccggcggggccaagggcaaggcgctggtcgacctgctgaagaag
gccggagcgcaggtgactacctgcaaccggatcacccgcgccgacgagcggtcggacttc
gtgcacgccgaggtccggcgcaacggcgggagcatcacccccggtgcgctggccgtcctg
gtcgaggcggtcggatcggacctgcgcgagctcgcctccgcggccgggcagctcgtcgcc
gacaccggcgggaagatcgacgaggccggggtgcgccggtaccaccgtggccgcgccgaa
tcgtccggcttcgcggtcgcggacgcagccgtcgcgggtgaccgcaggggcgcgctggag
gcgctgcgctgggcactggtactgggtgttccgcacgtcctgatcgcggatgcgctggcc
gactcggtacggacactggcgaaggtcggctcggcgggccggggcgacccgaaccggctg
gccggcgagctgggcatgccgccgtggaagatccgcaaggcgcagggcgtcgtccggcag
tggcgacccgagcagctcgccgtggcgatcgccgcgaccgcgcgggtcaacgccgacgtg
aagggcgtcgcggccgatcccgcctacgctctggagcgcgcggtgctcgccgtcgtcgag
gcccgcgtcgagcgctga
DBGET
integrated database retrieval system
