Pseudonocardia autotrophica: Pdca_47520
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Entry
Pdca_47520 CDS
T06156
Symbol
recQ_2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pdca_47520 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paut03019
]
Pdca_47520 (recQ_2)
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_47520 (recQ_2)
Enzymes [BR:
paut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pdca_47520 (recQ_2)
Messenger RNA biogenesis [BR:
paut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pdca_47520 (recQ_2)
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pdca_47520 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
BBG03543
LinkDB
All DBs
Position
5029807..5031918
Genome browser
AA seq
703 aa
AA seq
DB search
MAGMTADGETALRARAEEVLAQLAGPGARLREDQWTAISALVAQHRRALVVQRTGWGKSA
VYFVATALLREQGAGPTVIVSPLLALMRNQIDAAIRSGIVAVTVNSANADEWDAVYADIE
NGDVDVLLVSPERLNNPDFRDRVLPKLAASAGMLVVDEAHCVSDWGHDFRPDYRRLRTLI
AELPSGIPVLATTATANDRVVTDVSEQLGMGRDQQDTLVLRGSLDRESLRLAVVALPTPA
RRLAWLAAKLDELPGAGIVYTLTVQAADEVAEFLRERGFAVRSYSGKTDPEQRLAAESDL
QENRVKALVATSALGMGFDKPDLGFVVHLGAPASPVAYYQQIGRAGRALERAEVVLLPGR
EDRDIWAYFASLAFPAEPLVRQTLAVLSDRPQSTASIETRVDLSRTRLEMLLKVLDADGA
AKRVKGGWITTDQPWEYDTERHQRVNEARRAEQQAMLDYIATSECRLVFLRRQLDDPDPT
PCGRCDTCTGTVWSGEVSADGEQAAAERLTRPGIEVAPRKMWPSGMKELDVPLSGRIAAG
EQAGTGRAVGRLSDIGWGTRLRELLAGPDDPVPADVLDAVVRVLAGWGWEQRPVGVIGIG
SRTRPRQLEHLAQRIAEIGRLPLLGALPPAGDRPGPKENSAQRLAAVWAALDTGALPDLS
GVDGPVLLVDDLVDSGWTMTVAARAVRRAGAPAVLPMTLAVAG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcatgacggctgacggggagaccgcgctgcgggcacgggcggaggaggtgctc
gcgcagctcgccgggccgggggcccgcctgcgcgaggaccagtggacggcgatctccgcg
ctcgtcgcccagcaccggcgggcgctcgtcgtgcagcgcaccggctggggcaagtcggcg
gtctacttcgtcgcgacggcgctgctgcgcgagcagggcgcaggcccgacggtgatcgtc
tcgccgctgctggcgctgatgcgcaaccagatcgatgccgcgatccggtccgggatcgtc
gcggtcacggtgaactcggcgaacgccgacgagtgggatgcggtgtatgccgacatcgag
aacggcgacgtcgacgtgctgctggtcagccccgagcggctgaacaatcccgacttccgg
gaccgggtgctgccgaagctcgcggccagcgccgggatgctggtggtcgacgaggcgcac
tgcgtgtccgactggggccacgacttccggccggactaccggcggctgcgcacgctcatc
gcggagctgccgtccgggatcccggtcctggcgacgacggcgaccgcgaacgaccgggtg
gtcaccgatgtctccgagcagctcgggatggggcgcgaccagcaggacacgctggtgctg
cgcggctcgctggaccgtgagtcgctgcgcctcgccgtggtggcgctgcccaccccggcg
cggcggctggcctggctggcggcaaagctcgacgagctgcccggcgccgggatcgtctac
acgctgaccgtccaggccgccgacgaggtcgcggagttcctgcgcgagcgcgggttcgcg
gtgcggtcctactccggcaagaccgatcccgagcagcgactggccgccgaatcggacctg
caggagaaccgggtgaaggcgctggtggccacctccgcgctggggatgggcttcgacaag
cccgatctcgggttcgtcgtgcacctgggcgcgccggcctcgccggtggcctactaccag
cagatcggccgcgccgggcgcgcgctggagcgggccgaggtggtgctgctgcccggccgg
gaggaccgcgacatctgggcgtacttcgcgtcgctggcgttcccggccgagccgctggtc
cggcagaccctcgcggtgctgtccgaccgtccacagtcgacggcgtcgatcgagacccgg
gtggatctgtcccgcacccggctggagatgctgctcaaggtgctcgacgccgacggcgcg
gcgaagcgggtgaagggcggctggatcaccaccgaccagccctgggagtacgacaccgag
cggcaccagcgggtgaacgaggcccgccgggccgagcagcaggcgatgctcgactacatc
gcgacgtccgagtgccgcctggtcttcctgcgccgccagctcgacgacccggacccgaca
ccgtgcgggcgctgcgacacctgcaccggcacggtgtggtcgggcgaggtgtcggccgac
ggcgagcaggccgcggccgagcggctgacccgccccgggatcgaggtcgcgccgcgcaag
atgtggccgtccgggatgaaggagctcgacgtcccgctctccggccggatcgccgccggt
gagcaggccgggaccggccgggcggtggggcggctctcggacatcggctggggcacccgg
ctgcgcgagctgctcgccgggccggacgatccggtgcccgccgacgtactggacgcggtg
gtccgggtgctcgccggctggggctgggagcagcggccggtcggcgtgatcgggatcggc
tcgcggacccgtccgcgccagctcgagcacctggcgcagcggatcgcggagatcggccgg
ctgccgctgctcggggcgctgccgccggccggggaccggccgggtccgaaggagaactcc
gcccagcggctcgcggcggtctgggccgcactggacaccggagccctgcccgacctgtcc
ggtgtcgacggtccggtactgctcgtcgacgatctcgtcgactccggctggacgatgact
gtggcggcccgcgccgtccgccgggcgggcgccccggctgtgcttccgatgacacttgcg
gtcgccgggtga
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