Pseudonocardia autotrophica: Pdca_62430
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Entry
Pdca_62430 CDS
T06156
Symbol
groE_3
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pdca_62430 (groE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paut03019
]
Pdca_62430 (groE_3)
03110 Chaperones and folding catalysts [BR:
paut03110
]
Pdca_62430 (groE_3)
03029 Mitochondrial biogenesis [BR:
paut03029
]
Pdca_62430 (groE_3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
paut04147
]
Pdca_62430 (groE_3)
Enzymes [BR:
paut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Pdca_62430 (groE_3)
Messenger RNA biogenesis [BR:
paut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Pdca_62430 (groE_3)
Chaperones and folding catalysts [BR:
paut03110
]
Heat shock proteins
HSP60 / Chaperonin
Pdca_62430 (groE_3)
Mitochondrial biogenesis [BR:
paut03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Pdca_62430 (groE_3)
Exosome [BR:
paut04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Pdca_62430 (groE_3)
Exosomal proteins of other body fluids (saliva and urine)
Pdca_62430 (groE_3)
Exosomal proteins of breast cancer cells
Pdca_62430 (groE_3)
Exosomal proteins of colorectal cancer cells
Pdca_62430 (groE_3)
Exosomal proteins of bladder cancer cells
Pdca_62430 (groE_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CbiA
Rv2466c-like
DUF4844
Motif
Other DBs
NCBI-ProteinID:
BBG05034
LinkDB
All DBs
Position
6639323..6640951
Genome browser
AA seq
542 aa
AA seq
DB search
MAKQIAFDEEARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIE
LEDSWEKIGAELVKEVAKKTDDIAGDGTTTATVLAQALVREGLRNVAAGANPMSLKRGIE
KATEAVSQALLKSAKEVETKEQIAATASISAADKQIGELIAEAMDKVGKEGVITVEESQT
FGLELELTEGMRFDKGYISPYFVTDAERMEVELEDPYVLLVSSKISTVKDLLPLLEKVMQ
SGKPLAIISEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRREAMLADMAILTGGEVIS
EKVGLKLDTADLSLLGTARKVVVTKDETTIVDGAGDADQIAGRVAQIRAEIDRTDSDYDR
EKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQA
GAGLFEGLGLDGDEATGANIVKVALEAPLKQIAINAGLEGGVVAEKVRNLPTGEGLDAAT
GEYKDLVKAGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEKGGGAPADPTGGMGGM
DF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagatcgcgttcgacgaggaggcccgtcggggcctcgagcggggcatgaac
accctcgccgacgccgtcaaggtgacgctgggcccgaagggccgcaacgtcgtcctggag
aagaagtggggcgcgccgaccatcaccaacgatggtgtgtcgatcgccaaggagatcgag
ctcgaggactcctgggagaagatcggcgccgagctggtgaaggaggtcgccaagaagacc
gacgacatcgccggtgacggcaccaccaccgccaccgtgctggcccaggcgctggtccgt
gagggcctgcgcaacgtggccgccggcgcgaacccgatgtcgctcaagcgcggcatcgag
aaggccaccgaggccgtctcccaggcgctgctgaagagcgccaaggaggtcgagaccaag
gagcagatcgcggccaccgcgtcgatctccgccgccgacaagcagatcggcgagctcatc
gccgaggcgatggacaaggtcggcaaggaaggcgtcatcacggtcgaggagtcgcagacc
ttcgggctcgagctcgagctcaccgagggcatgcgcttcgacaagggctacatctcgccc
tacttcgtgaccgacgccgagcggatggaggtcgagctcgaggacccctacgtcctgctc
gtctcgtccaagatctcgacggtcaaggacctgctcccgctgctggagaaggtcatgcag
tcgggcaagccgctggcgatcatctccgaggacgtcgagggcgaggccctggccaccctg
gtcgtcaacaagatccgtggcaccttcaagtccgtggccgtcaaggcgccgggcttcggt
gaccgccgcgaggcgatgctggccgacatggccatcctcaccggtggcgaggtcatctcg
gagaaggtcggcctcaagctcgacaccgccgacctgtcgctgctgggcaccgcccgcaag
gtcgtggtgaccaaggacgagaccaccatcgtcgacggcgccggtgacgccgaccagatc
gccggccgggtcgcccagatccgcgccgagatcgaccgcaccgactccgactacgaccgc
gagaagctccaggagcgcctcgcgaagctggccggtggcgtcgctgtcatcaaggcgggc
gcggccaccgaggtcgagctcaaggagcgcaagcaccgcatcgaggacgccgtccgcaac
gccaaggcggccgtcgaggagggcatcgtcgccggcggcggcgtcgccctgatccaggcc
ggtgccggcctgttcgagggcctcggcctggacggtgacgaggccaccggcgcgaacatc
gtcaaggtcgcgctggaggctccgctcaagcagatcgccatcaacgccggcctcgagggc
ggcgtcgtggcggagaaggtccgcaacctgccgaccggtgagggcctcgacgccgccacc
ggcgagtacaaggacctggtcaaggccggaatcatcgacccggccaaggtcacccgctcg
gcgctgcagaacgcagcctcgatcgcggcgctgttcctgaccaccgaggcggtcatcgcc
gacaagccggagaagggcggcggcgcccccgccgacccgaccggcggcatgggcggcatg
gacttctga
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