Polyangium aurulentum: E8A73_009510
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Entry
E8A73_009510 CDS
T08107
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pauu
Polyangium aurulentum
Brite
KEGG Orthology (KO) [BR:
pauu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pauu03019
]
E8A73_009510 (hrpA)
Enzymes [BR:
pauu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E8A73_009510 (hrpA)
Messenger RNA biogenesis [BR:
pauu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E8A73_009510 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_19
AAA_22
nSTAND_NTPase5
nSTAND3
T2SSE
AAA_25
NACHT
AAA_30
AAA_23
SLFN-g3_helicase
AAA_16
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UQA60690
LinkDB
All DBs
Position
complement(2387477..2391241)
Genome browser
AA seq
1254 aa
AA seq
DB search
MLGVVTTRAPRNPKPTPPVAEAREGGPIRFPEELPISARVADIARAINDHPVVIVAGETG
SGKTTQLPKICLAMGRGLSARIGVTQPRRIAATSVAARVARELDVELGREVGYKIRFSDR
TSPATYVKFMTDGILLAEIQGDPQLRAYDTIIVDEAHERSLNIDFLLGYLKRLLPRRRDL
RVVISSATLETERYAAFFDDAPVVQVSGRTFPVEVIHRPPREDEGEIAEAIANTVEEITS
LDPREDILVFLPGEREIHEAMDELASHGLPHTVLLPLYGRLPPGEQQRVFQTLPQRRVVL
ATNVAETSLTIPGIVYVIDAGYARINRYLARSGVNSLQVEPISRASAEQRKGRAGRLRSG
VCFRLYDEKDFEARPQYTDPEILRVGLASAILQMKSLGIGDIRDFPFLDPPPKRAVDEGY
RVLEELGAIDDDGALTEIGKKLSRLPLDPRLGRMILGGEAEGALREVLVIAAALGVQDPR
ERPLAAQQKADEAHRRFRDETSDFAGLLKLWHAYQGAQAKMSRNQLHKWCRDNFLSHLRM
REWSDVHHQIGQIAREMGFRPNDAPASDEAIHKAVVPGLLSKIGMWNAEARAYVGARQTR
FVLHPSSGLARKPPPWVMAAELMETSQLFARTAARVDPAWLEGAAGALVRKHYGDPHWEQ
KPAQVMAKEQVSLYGLPIVRDRRVHYGPIDPAASRKIFILHALVRQEYATKAPFMEHNRR
LFEEVRRLRDRARKSDMLADEHALALFFEERVPDDVYSGKTFEQWRKKAEADNPKILELS
LADVLLEEANELSPERFPETLSLYGTKLALTYRFDPGEDDDGITVTLPIALLPQVDPGVL
EWIIPGWHDDKIALVLESLPKNLRKAIGGVKEVAKEFSRKLKPFEGPMLEVLARAIQERT
GVRVPPDSWNLDDLPPYLRFYFRVVGDDGRTLGEGRDLGTLKERLGARAKEAWAGASKAN
LEREGLTSWSFDALPEEVRIEVGGRKVAGYPALVETDNTVALRILPSRAAADEANRSGLR
RLCMTQMGMPMNKLEAQISSAVATGPLADSAGAGGLPLRRQIVIRAFDDALGLTDPASYP
RTRAAFLARLDEGKRKLPGAMAQLGKLAGEVSAEYARTHHALKAISGKPGAPRAALDDVR
TQLAHLAPPGMFRDMRLERLAHLPRYLRAIQVRLERMPNGPQKDQAKAEQVLPFWNNWLK
HREGLLARGVPAEDLDTFRWLIEEFRVSLFAPELKTAVPVSAQRLTEFWKLFTA
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcgtcgtgacgacccgcgccccccgaaatcccaagcccactccgcccgtcgcc
gaggcccgggagggcgggccgatccgtttccccgaggagctgcccatctcggcgcgcgtg
gccgacatcgcccgcgcgatcaacgaccaccccgtggtgatcgtcgccggtgagacgggc
tcgggcaagaccacgcagctcccgaagatctgcctcgcgatgggccgcggtttgtcggcc
cgcatcggcgtcacgcagccccgccgcatcgcagcgaccagcgtggccgcccgcgtcgcg
cgcgagctcgacgtcgagctcggccgggaggtcggatacaagattcgcttctccgatcgc
acgagcccggcgacttacgtcaagttcatgaccgacggcatcctgctcgccgagatccag
ggtgacccgcagttgcgcgcgtacgacacgatcatcgtcgacgaggcgcacgagcgcagc
ctcaacatcgattttctcctcggctacctgaagcggcttctgccgcggcggcgcgatctg
cgcgtggtcatcagctctgccacgctcgagaccgagcgctatgcggccttcttcgacgac
gcgcccgtcgtgcaggtctcgggccggaccttccccgtcgaggtgattcacaggccgccg
cgcgaggacgagggcgagatcgccgaggccatcgcgaacacggtcgaggagatcacctcg
ctcgatccgcgcgaggacatcctggtctttctgccgggcgagcgcgagattcacgaggcg
atggacgagctcgcctcgcacgggctgccgcacaccgtgctcctgccgctctatggtcga
ttgccgccgggcgagcagcagcgggtgttccagacgctgccccagcgcagggtcgtgctg
gcgacgaacgtggccgagacctcgctgacgatcccgggcatcgtgtacgtgatcgacgcg
ggttatgcgcgcatcaatcgctatctcgcgcgctcgggggtgaactcattgcaggtcgag
cccatttcgcgcgcgagcgccgagcagcgcaagggccgcgcgggtcgcctgcgcagcggc
gtttgcttccggctctacgacgagaaggatttcgaggcgcgcccccagtacacggatccg
gagatcctgcgcgtcggtctcgcgagcgccatcttgcagatgaaatcgctcgggattggc
gacatccgcgattttcccttcctcgacccgcccccgaagcgcgccgtcgacgagggatac
cgggtgctcgaggagctgggcgcgatcgacgacgacggcgcgctgaccgagatcggcaag
aagctctcgcgattgccgctcgatccgcgtctcggcaggatgatcctgggcggcgaggcg
gagggcgccttgcgcgaggtgctcgtcatcgcggccgcgctcggcgtgcaggacccgcgc
gagcggcccctcgcggcgcagcaaaaggccgacgaggcgcaccggcgcttccgcgacgag
acatccgatttcgcggggctgctcaagctctggcacgcctatcagggcgcgcaggcgaag
atgtcgcgcaaccagctccacaaatggtgcagggacaacttcctctcgcacctgcgcatg
cgcgagtggagcgacgtgcaccatcaaattggtcagatcgcccgggagatgggctttcgg
ccgaacgacgcgcccgcgagcgacgaggcgatccacaaggccgtggtgccggggctgctc
agcaagatcggcatgtggaatgcggaggcgcgggcttatgtcggggcgcggcagacgcgc
ttcgtgctgcacccgtcgtcggggctcgcgaggaagccgcccccgtgggtgatggcggcc
gagctgatggagacctcgcagctcttcgcccgcacggcggcgcgcgtcgatccggcgtgg
ctcgaaggcgcggccggggcgctcgtccggaagcattacggagatccccactgggagcag
aagcccgcgcaggtgatggcgaaggagcaagtctcgctctacggcctgcccatcgtccgt
gaccgccgcgttcattacggccccatcgatccggccgcgtcgcgcaagatcttcatcctc
cacgcgctcgtgcggcaggagtacgcgacgaaggctccgttcatggagcacaacaggagg
ctcttcgaggaggtgcggcgattgcgcgacagggcgcgcaagagcgacatgctcgccgac
gagcacgcgctcgccctcttcttcgaggagcgcgtccccgacgacgtgtacagcggcaag
accttcgagcaatggcgcaagaaggccgaggccgataacccgaagatcctcgagctgtcc
ctcgccgacgtcctcctcgaagaggcgaacgagctatcgcccgagcgcttccccgagacg
ctctcgctctacgggaccaagctcgcgctcacgtatcggttcgatccgggcgaggacgac
gacgggatcacggtgacattgccgatcgcgctcttgccgcaggtcgatccgggcgtgctc
gaatggatcatccccggctggcacgacgacaagatcgcgctcgtcctcgaatcgctgccc
aagaacctgcgcaaggcgatcggcggggtgaaggaggtcgccaaggagttctcgcgcaag
ctcaagcctttcgaggggcccatgctcgaggtcctcgcgcgcgcaattcaagagcgcacg
ggcgtgcgcgtgccgccggattcgtggaacctcgacgatctgcccccgtatctgcggttt
tacttccgcgtggtcggcgacgacggccgcacgctcggcgaggggcgcgatctcggcacg
ctgaaggagcggctcggcgcgcgggccaaggaggcgtgggcgggcgcgtcgaaggcgaac
ctcgagcgcgaggggctcacgtcgtggagcttcgacgcgctgcccgaggaggtgcggatc
gaggtcggcgggcgcaaggtggccggctatccggcgctcgtcgagaccgacaacacggtg
gccctgcgcatcctgccctcgcgcgcggcggcggacgaggcgaaccggagcggcctgcgg
cggctgtgcatgacgcaaatgggcatgccgatgaacaagctcgaagcgcagatctcctcg
gccgtcgcgacgggcccgctcgcagacagcgcgggcgcgggcggcttgcccttgcgaagg
cagatcgtgattcgcgcgttcgacgatgcgctcggcttgaccgatccggcatcgtatccg
aggacgcgcgccgccttcttggcgaggctcgacgagggaaagaggaagctgcccggcgcg
atggcgcagctcggcaagctcgcgggggaggtgagcgccgagtatgcccggacgcaccat
gcgctgaaggcaatctcgggcaagcccggggcgccgcgggcggcgctcgacgacgtgcga
acgcagctcgcgcacctcgcgccgccggggatgttccgggacatgcggctcgaacggctc
gcgcatctgcctcgctatctgcgcgcaatccaggtgcggctcgaacgcatgcccaatggc
ccgcagaaggatcaagccaaggccgaacaggtgctgcccttctggaacaactggctcaag
catcgcgaggggctcctcgcgcgcggcgtgccggcggaggacctcgacacgttccgctgg
ctcatcgaggagtttcgcgtctccctgttcgcgccggagctgaagacggcggtgccggtg
tcggcgcagaggctcacggagttctggaagctgttcacggcctga
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