Polyangium aurulentum: E8A73_041515
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Entry
E8A73_041515 CDS
T08107
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pauu
Polyangium aurulentum
Brite
KEGG Orthology (KO) [BR:
pauu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pauu03016
]
E8A73_041515
Enzymes [BR:
pauu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E8A73_041515
Transfer RNA biogenesis [BR:
pauu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E8A73_041515
Prokaryotic type
tRNA splicing ligases
E8A73_041515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CysS_C
Motif
Other DBs
NCBI-ProteinID:
UQA57696
LinkDB
All DBs
Position
complement(10571195..10572667)
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AA seq
490 aa
AA seq
DB search
MATRSPSSSTSERPAPPYPFVEVAPYVYEIPTAYREGMRVPARVFQSLEGLPALLSDHAV
DQLVNVTTLPGIVDAAMGMPDMHEGYGFPVGGVAATLLPDGVISPGGIGFDINCGVRLLV
SSLERPDKSVVETIVGELQRSVPSGAGRSGKWSFAGKKLDKILEGGAPVLVRDHGIGSEE
DLNFIESGGVLEGADASAVSDRARQRGGDQLGTLGSGNHFLEVQIVDEVFDEAVAQRLGL
LPGRMTVLVHSGSRGFGHQVCTDYVRAMDAAMRRYGIHVPDRQLACAPFSSPEGQRYFAA
MCAAANFGFSNRHLIGHVVRDVFRRTFGEKQGHLRLIYDVGHNTAKVEKHNGQKLCVHRK
GATRAFGPSSRDIPAGYRDIGQPVFIPGSMGTSSFVLIGTDKANATSMGSACHGAGRQMS
RAAAKKKVTGAELRKELEARGIVIRCSSNQELAEEAPAAYKDVDRVVDVVHEAGIARKVV
RLRPIGVVKG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggctactcggtcaccgtcatcctcgacatctgaaaggcccgccccgccgtacccgttt
gtcgaggtcgccccctacgtgtacgagatcccgaccgcgtaccgcgaaggcatgcgcgtg
cctgcgcgggtcttccagagcctcgagggcctccctgcgctgctctccgatcacgccgtg
gatcaactcgtcaatgtcaccacgctgcccggcatcgtcgacgcggccatgggcatgccc
gacatgcacgagggctatggtttccccgtcggaggcgtggccgcgaccctcctgcccgac
ggcgtcatctcgccgggcggcatcggattcgacatcaactgcggcgtgcggctgctcgtc
tcctcgctcgagcggcccgacaagagcgtggtcgagaccatcgtgggcgagctgcagcgc
agcgtgccttcgggcgcggggcggagcggcaagtggtcgttcgcgggcaagaagctcgac
aagatcctcgagggcggcgcgcccgtgctcgtgcgcgatcatggcattggatccgaggag
gatctcaacttcatcgagtcgggcggcgtgctcgagggcgcggacgcctcggcggtctcg
gaccgggcgcggcagcgcgggggcgatcagctcggcacgctcggcagcggcaatcatttc
ctcgaggtgcagatcgtcgacgaggtcttcgacgaggccgtcgcgcagcggctcggcctg
ctccccggtcgcatgaccgtgctcgtgcactcgggctcgcgcgggttcggccaccaggtg
tgcaccgattacgtgcgcgcgatggacgcggccatgcgccgctatggcatccacgtgccc
gatcgccagctcgcgtgcgcgcccttctcgtcgcccgagggccagcgctatttcgcggcg
atgtgcgcggcggcgaacttcggtttttcgaaccgccacctcatcggccacgtcgtgcgc
gacgtcttccgccggacgttcggcgagaagcaggggcatttgcggctgatttacgacgtc
ggtcacaacacggccaaggtcgagaagcacaatggccagaagctgtgcgtgcacaggaag
ggcgcgacgcgcgcgttcggcccgtcgagccgcgacattccggcggggtatcgcgacatc
ggccagccggtgttcattccgggcagcatggggacctcgtcgttcgtgctgattggcacc
gacaaggcgaacgcgacgtcgatgggcagcgcctgtcacggcgcgggccggcagatgagc
cgcgcggcggcgaagaagaaggtgacgggggcggagctgcgcaaggagctggaggcgcgc
ggtatcgtgatccgctgctcgtcgaaccaggagctcgcagaggaggcgccggcggcgtac
aaggacgtcgaccgcgtggtcgacgtggtgcacgaggccggcatcgcgaggaaggtggtg
cgcctgcggccgattggcgtggtgaagggctga
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