Prunus avium (sweet cherry): 110745883
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Entry
110745883 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110745883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110745883
03009 Ribosome biogenesis [BR:
pavi03009
]
110745883
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110745883
Spliceosome [BR:
pavi03041
]
Complex A
U1 snRNP components
U1 related factors
110745883
Complex B
110745883
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110745883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
110745883
NCBI-ProteinID:
XP_021801729
UniProt:
A0A6P5RFK0
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MYAYDNRYTDVNSYRERRSDLMGPAPAVAPPAGPAYGRGGGAAPYAGPTPPVAPYSGQVA
GPVTGPGDFNGYPPFQPPSGRFNIGRGGGNGSFGGRASNGHIGGGRGRGGGRDFDRGRGG
GGGGRSSGFSRGGSAGFSGGRGFGGRGGGRHGGSSRGDLDNIVLPKQDFGRLVPFEKNFY
VESSSVRAMSEQEVMVYRNRREITVEGHDIPKPIQMFEDANFPDYCLDAIAKLGFVEPTP
IQAQGWPMALKGRDLVGIAETGSGKTLSYLLPALVHISAQPRLVPGEGPIVLVLAPTREL
AVQIQEESSKFGSRSNIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNL
RRVTYLVLDEADRMLDMGFEPQIRKIVSQTRPDRQTLYWSATWPREVETLARQFLRNPYK
VIIGSASLKANQSIKQVIEVVSDGEKYNRLIKLLKEAIVGSRILIFVETKKGCDQVTKQL
RMDGWPALSIHGDKNQAERDWVLAEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSS
LEDYVHRIGRTGRAGATGTALTFFTHANAKFARELIKILQEAGQVVSPALAAMSRSSGSF
GAGSGGNFRNRGRGGGFGNRISGSNTVPIGYKRPW
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcctacgacaacagatacaccgacgtcaactcctaccgtgagcgccgaagtgac
ctaatgggtccagcgcctgcggtggctccgccagcgggccccgcctatggccgcggcggt
ggggcagccccgtatgcgggcccaacgcctccggtcgccccgtattcgggacaagtagct
ggaccggtaaccggtccaggagattttaatgggtacccgccgttccagcccccttcgggt
cggttcaatattgggcgaggtggtggtaatgggagttttggtggcagagcctccaatggt
catattggtggtggaaggggccgtggcggtggtagggattttgatcgaggccgtggcggt
ggcggtggcggtaggagctctggttttagccgcggtggaagtgcgggttttagcggtggg
cgtggatttggtggaagaggaggaggtagacatggtgggtcatcaagaggagacttggat
aacattgtgcttcccaagcaagattttgggagattggtaccttttgagaagaatttctat
gttgagagctcttcggtgagggcaatgtcagagcaggaggttatggtgtatcgcaacagg
cgggagattactgtcgaagggcatgatatcccaaagccgattcagatgtttgaggatgcg
aatttccctgattactgccttgatgctattgcaaaattgggttttgttgaaccaacacca
attcaggcccaaggatggccaatggcattaaagggtagagatttagttggaattgccgag
actggttctggtaagactttgtcctatctgctgccagctttggtgcatattagcgcacag
cctcggttagtgccaggtgaaggtcctattgtgctagtattagcacctactcgagaattg
gcagttcaaattcaagaagaatcttcaaaatttggctcacgttctaatattaggagtact
tgcatttatggtggtgctccaaaaggaccccagatacgggatcttaaaagaggggttgag
attgtcatagctacacctggccgactgatagatatgttggaagcacagcacacaaatttg
cgaagagtgacctacctagttttggatgaggctgacaggatgttggacatgggatttgag
cctcagataaggaaaattgtatcacaaacccgaccagatcggcagacattgtattggagt
gccacgtggccaagggaggttgaaactttagcaaggcagtttttacgtaacccatataag
gtaatcattggatcagcaagtcttaaagcaaatcaatctataaaacaagttattgaagtt
gtgtcagatggggagaaatataataggctgatcaaactgctcaaagaagcaatcgttggg
agccgaattctgatatttgtcgagacgaaaaaaggatgtgaccaagttactaagcaattg
aggatggatggatggccagctctatccattcacggtgataaaaaccaggccgaaagggac
tgggtcttggctgagtttaaaagtggaaggaatcctataatgactgccactgatgtggct
gcgcggggtcttgatgtgaaggacataaaatgtgtgatcaattatgattttccatcaagc
ctagaggattatgtccacagaattggacgaactggtcgtgcaggggcaacaggaactgct
ttaacctttttcacacacgcaaatgcgaaatttgctagggaactaatcaagatcctgcaa
gaagcaggtcaggtggtgagccccgcattggctgcaatgtcccggtcaagtggtagtttc
ggagcaggctctggagggaacttccggaatagagggcgaggaggaggatttgggaaccgg
atttcgggttcaaatactgttcctattggttacaagagaccttggtag
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