KEGG   Prunus avium (sweet cherry): 110745888
Entry
110745888         CDS       T05161                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03082  ATP-dependent chromatin remodeling
pavi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110745888
   03083 Polycomb repressive complex
    110745888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pavi03036]
    110745888
Enzymes [BR:pavi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110745888
Chromosome and associated proteins [BR:pavi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110745888
   HDAC complexes
    Sin3A-HDAC complex
     110745888
    BRAF-HDAC complex
     110745888
    REST complex
     110745888
    SHIP complex
     110745888
    MiDAC complex
     110745888
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110745888
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110745888
  Chromatin remodeling factors
   NuRD complex
    110745888
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 110745888
NCBI-ProteinID: XP_021801735
UniProt: A0A6P5R9Z5
LinkDB
Position
Unknown
AA seq 467 aa
MESEGGASLPSGPDAKKRRVTYFYEPTVGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRM
EINRPFPAGPNDIRRFHSDDYVDFLASVSPETLAESSYSRHLKRFNVGEDCPVFDGLFGF
CQASAGGSIGAAVKLNRQDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHKR
VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGTGKNYALNVPLN
DGMDDESFRGLFRPILQKVMEMYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLR
SFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIPPSN
MENLNSPKEMEAIRNTLLDQLSRIPHTPSVPFQTTPPTTQVPEEAEENMEERPKPRIWDG
ADYDSDPEEDKHWTKFSNPVSQHAVKTEMRDDADGMEDEKPNHPPCC
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggagtcggaaggcggggcgtcactgccgtcaggaccagacgcgaagaagcggcgagtg
acatacttctacgagcccaccgtcggcgactactactacggccaaggccacccgatgaag
ccccaccgcatccgcatggcccacaacctaatcgtccactacggcctccatcgtcggatg
gagatcaaccgccccttccccgccggccccaacgacatccgccgctttcactccgacgac
tatgtcgacttcctcgcctccgtcagccccgagactctcgccgagtcctcctactcccgc
cacctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctcttcggcttc
tgccaggcctccgccggcggctccatcggcgctgctgtcaagctcaaccgccaggacgcc
gatatcgccctcaactgggccggcggcctccaccacgccaagaagtccgaggcctccggc
ttctgttatgtcaatgatatcgtcctcggcattcttgagctgctcaaggttcacaagcgt
gtgctttatgtagatattgatgtgcaccatggagatggagttgaggaggcattttacacc
actgacagggtcatgactgtgtccttccataaatttggggatttctttcctgggactggg
cacattaaggatgttggggcagggactgggaagaattatgcgctgaatgtcccgctaaac
gatggaatggatgacgagagttttcgtggtctgtttcggcccatcctccaaaaagtcatg
gagatgtatcagcctgatgcagttgttctacagtgtggtgcagattcgttgtctggtgat
aggttggggtgtttcaacttgtctgtcaaaggccatgcagattgtcttcgcttccttaga
tcttttaatgttcctctgatggtcttgggcgggggaggttatacgatccggaatgttgcc
cgttgctggtgttatgagacagcagtggcagttggggtggaacctgataataagttgcct
tacaatgaatactatgagtattttggtccagattatactcttcatattcccccatccaac
atggagaacctaaactcacctaaagagatggaggcaataaggaatacactactagaccaa
ctttctagaatacctcatacacccagcgttcctttccagacaacaccaccaacaacacaa
gttccagaggaggcggaagagaacatggaagaaaggccaaagcctcgcatttgggatggc
gcggattatgattctgatcctgaagaagacaagcattggactaaattctccaaccctgtt
agtcagcatgcagttaaaactgagatgcgggatgatgcagatgggatggaagacgagaaa
ccaaatcatcctccgtgctgctga

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