Prunus avium (sweet cherry): 110745899
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Entry
110745899 CDS
T05161
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110745899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110745899
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110745899
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110745899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
LCE6A
Motif
Other DBs
NCBI-GeneID:
110745899
NCBI-ProteinID:
XP_021801756
UniProt:
A0A6P5RLH7
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFRKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLVTIVPPGLVKGAPVLGLKTSLAVSASPMPAAATSTTQQSTSVQEPVEDTVSQDSNV
DNIPRTPPPKSSALASSPASTPVGGHASPLSVSVSSHNLPGAPSVSAVPGPIAVRGVTEN
AGASNSSSPVSLSASVKEEELASFPGRRPSPSLSDAGLVRGVGRGGLSAQIPSSIPLSSS
NVAPSNSTLSAAPSVSDVTKRNIMGADERIGSSSVVQPLVSPLSNRLILPQAAKASDGSI
PVDSGNAGEAAAIPGRAFSPSMVSSMQWRPGSSFQNQNEAGLFRGRTEIAPDQREKFLQR
LQQVQQGHSTILGMPPLAGGNHKQFSGQQQNPLLQQFNSQNSSVSSQAGLGLGVQAPGLG
TVAPTTLQQQLNSIHQQSNQQALMSSGPKEADVGHPKVEDQQQQQNIPDDSTADSTPVSG
LVKNLINEDDLKASYAIDSLAGVSGSSTEPAQVPRDIDLSPGQPLQPNQPSGSLGVIGRR
SVSDLGAIGDNLSGSTPNSGGTHDQLYNLQMLEAAYYKLPQPKDSERARSYTPRHPAITS
PSYPQAQAPIVNNPAYWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK
YNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcggaaacttcagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtggatgtcttcgatagcatatggaacaaggtttatgatacggacaatgcgaaccag
aaggaaaagtttgaggcggacctaaagaaggagattaagaagctccagaggtacagggac
caaatcaagacttggattcaatccagcgaaatcaaggataagaaggtcagtgcctcttat
gagcaagctctggtggatgctcgcaagcttatcgagcgtgaaatggaaaggtttaagatt
tgtgaaaaggagaccaaaacaaaagcattttctaaagaaggcttgggccaacaacctaaa
accgatccgagggagaaggccaagtctgagacaagggattggataaacaatgtggttgga
gagttggaatctcagattgacagctttgaagctgagattgaaggcctatctttcaggaaa
gggaagggcagaccacccagactgacccatctagagacatctattactcggcataaggct
cacataatgaagttagaactgatcctgaggctattggataatgatgaactgagtcctgag
caggtcaatgatgtcaaagacttcttggaagactatgttgaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaagtggagtcc
cttgaagatctggttactatcgtccctcctggtcttgtcaagggtgcacctgtgcttggc
ttgaagacttctttggcagtatccgcatctccaatgcctgccgcagctacttccactact
cagcagagtacttctgtacaagagccagttgaagatacagtttcccaggacagtaatgtt
gataatattcctaggactccacctcctaaaagtagtgcacttgcttcttctcctgcatca
acaccagttgggggtcatgcaagtcctctctctgtgagtgtttcatctcacaatttgcct
ggtgcaccaagtgtttcagccgttccaggtccaattgctgttcgtggtgtcacagagaat
gcaggagcttctaattcttcatctcctgtaagtctgtccgcttctgtgaaggaagaagaa
ttagcaagcttcccgggccgtagaccatcgccatctctttctgatgctgggcttgtgagg
ggcgttggtagaggtggcctctctgcacagattccatctagtatccctcttagttctagt
aatgtagcgcctagtaatagtactcttagtgcagctccttcggtttctgatgtgacaaag
agaaatataatgggagctgatgagagaattgggagtagtagcgtagtgcagcctcttgtt
tcccctctaagtaacagattgatcttgcctcaagctgccaaggctagtgatggaagtatt
ccagttgattctggtaatgctggtgaggctgctgctattcctggcagagcattttctcct
tctatggtctctagcatgcaatggaggcctggaagttccttccaaaaccagaacgaagcg
gggttgtttcgtggaagaactgaaatagcacctgatcagagggagaaatttttgcagcgg
ctccaacaagtgcagcaaggtcacagtaccattctcggcatgcctcctcttgctggtgga
aatcataagcaattttctggacagcagcaaaatccactcttacaacagtttaattctcag
aactcatctgtatcttctcaagctggcctcggactaggagtacaggccccaggtcttggt
actgttgcacctaccaccttacagcagcagctaaattctatccatcaacagtctaaccaa
caggcattgatgtcgagtggaccaaaagaagctgatgttggtcatccaaaagttgaggac
cagcagcaacaacaaaatatacctgatgattcaactgcggactctactccggtttctggg
ctcgtaaagaatctaattaatgaggatgatttgaaagcctcatatgcaattgattctctg
gctggagtttctggctcttctacagagcctgctcaagtaccacgagatatcgatctctct
cccgggcaacctttacagcccaatcaaccttccggtagtcttggtgttattggccgaaga
agtgtttctgaccttggtgcaattggtgataacctttctggatcaactcctaattctggg
ggaacgcacgatcagttgtataatttgcagatgcttgaggctgcttattacaaacttcca
caacccaaagactcggaacgtgcaaggagctacactccaaggcaccctgcaataacttct
cctagctacccccaagcacaagcacctattgttaacaatcctgcctactgggaacgtttg
ggtcttgaaccatacggcactgataccctgttctttgcattttactatcagcagaacact
tatcagcaatatttggcggccaaagagttgaagaagcaatcttggagataccacaggaaa
tataacacttggtttcaacgacacgaggagccaaaagttgccactgatgaatatgaacag
gggacatatgtgtactttgacttccatattgcaaatgatgatctacaacatggatggtgt
caaaggatcaaaaccgagtttacttttgaatataactatcttgaagatgaacttatcgtt
tag
DBGET
integrated database retrieval system
