Prunus avium (sweet cherry): 110746856
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Entry
110746856 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110746856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110746856
03012 Translation factors [BR:
pavi03012
]
110746856
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110746856
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110746856
Translation factors [BR:
pavi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110746856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
ATPase
Dicer_dimer
AAA_30
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
110746856
NCBI-ProteinID:
XP_021802781
UniProt:
A0A6P5RP28
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MPYSALFEGYIIRTTAMSLKPTTTSSPILASLRRTHNHRHHHIASVRPSFFGCTMRNSRY
HTHYLARSQNWNACYYLPRHVGPVGEVTCLASSRAVEADWKQRQLRSTAVPFLYQQNLGY
GRFAYQDASASEDSDYERGSSQRQSGGSTLENIDEWRWKLTMLLRNKDGQEVVSRERKDR
RDFEHLSELANRMGLYSRQYSKVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHRDVDAH
LKAYVSQKPMKTGNLSESSFSRSSSSGSMVNDGGPYEQEEPSIQNSDAMEKILLRKSLQL
RNRQQHWQESPEGQKMLELRRSLPAYKEKDALLKAISENQVIVVSGETGCGKTTQLPQYI
LESEIEAARGTACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGVKGRDTRL
LFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA
TLNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTRYQLNEYNQIDDYGQEKAWKMQ
KQAPGFKKRKSQIASTVEEVLEAADFREYSPRTRESLSCWNPDSIGFNLIEHLLCHIVRK
ERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSSEQRLIFDKPEDEI
RKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAG
RVQPGECYHLYPRCVYDALADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQAPEH
LSVQNAIEYLKIIGALDDNEDLTVLGRHLSMLPVEPKLGKTLILGAIFNCLDPVMTVVAG
LSMRDPFLMPFDKKDLAESAKAQFSARDNSDHLALVRAYDGWKNAERVQSGNEYCWRNFL
SAQTLKSIDSLRKQFFFLLKDTGLVDHHTETCNTWSHDEHLVRAVICAGLFPGICSVVNK
EKSIVLKTMEDGQVMLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLF
GGNISRGGLDGHLKMLGGYLEFFMNPALANTYIFLKGELGELIHNKLLNPKLDMQSHTHL
LSALRLLVSEDQCEGRFVFGRKVPVPSKKATKEIKPGTLTVGDKGGPNNNSKNQLQTLLV
RAGHDAPTYKTKQLKNNQFCSTVIFNGLNFVGQPCNSKKQAEKDAAAEAVLWLKGERHSS
STDIDHMSMLLKKSKKTSQKRTSFDSAKWG
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccctctttgagggctatataataagaacaaccgccatgtctctcaaa
ccgaccaccacctcatcccccattttggcctctttgcgtaggacccacaaccaccgccac
caccacatagcttcagtaaggccgtcttttttcggttgcaccatgaggaacagccgttac
cacacccactaccttgcccggtcgcagaattggaatgcgtgttattatctgccgcgtcac
gtggggccagtgggggaagtcacgtgcctggcctcgtcgcgggcggtggaggctgattgg
aagcagaggcagttgaggagtacggcggtgccctttttgtaccagcagaacttgggttat
ggacggtttgcataccaagacgcctccgctagtgaggattccgactacgaaaggggttct
tctcagcgccaatcgggtggttcgacccttgaaaacattgatgaatggagatggaagtta
accatgcttcttcgcaacaaagatgggcaagaagtggtgtccagggaaagaaaggacaga
cgtgattttgagcatctctcagaactggcaaataggatgggtttatatagccgtcagtat
tcaaaagttgtagtatttagtaaagttcctcagccaaattacagacctgatctggatgat
aagcgaccgcaaagagaggttgtcttaccttttggactgcatagagatgtagatgctcat
ctcaaagcctatgtatctcaaaagccaatgaagacaggaaatttatcagaatcttctttt
tcaagatcaagcagtagtggaagtatggttaatgatggaggaccttatgagcaggaggag
ccctcaatacagaatagtgatgccatggagaaaattcttctgcggaaaagcttgcaactg
cgtaataggcaacaacattggcaggaatctcctgaaggtcaaaagatgcttgaacttcgt
agaagcctgcctgcatataaggagaaagatgcactgttaaaagccatatcagaaaatcag
gtcatagttgtctcaggtgaaacaggttgtggtaaaactacacagcttcctcagtacatt
ttagaatctgagattgaagctgctcgaggaactgcctgtagtattatttgtactcagcct
agacgaatatctgccatggctgtttctgaaagagttgctgcagagcgaggggagaaactg
ggggaatctgttggttacaaagttaggctggaaggggtgaaggggagggacacccgcctt
cttttttgcaccactggcatattattgaggcgattacttgtcgacagaaagttgagaggt
gttacacatgttattgttgacgagattcatgaacgtggaatgaatgaagattttcttctt
atcgtcctgaaagaacttctccctcgtcgaccagagttgaggttaattttgatgagtgca
accctaaatgctgagcttttctcttcctactttggtggtgctccaatgattcatattcct
ggttttacatatccagtccgagcacattttctggagaatattctagaaatgactaggtat
cagttgaatgaatacaatcaaattgatgattatggtcaagaaaaggcgtggaaaatgcag
aaacaagctccaggtttcaaaaaaaggaagagccaaattgcttctacagttgaggaggta
cttgaagctgctgattttagggagtacagtccaaggactcgagagtctctctcctgttgg
aatcctgattccattggtttcaacctcattgagcatctgctttgccacatagtcaggaaa
gaacggcctggtgctattttggtttttatgactggttgggatgacattaactccttgaag
gatcaactccaatctcatcccctattaggagatcctagcagggtcctactgcttgcatgt
catggttctatgcctagctctgagcagaggttaatatttgataagccagaagatgaaatt
cggaaaatagttctagcgacaaacatggctgagactagtatcactatcaatgatgttgtt
tttgtggttgattgtggaaaggcaaaagagacatcatatgatgcactaaataacactccc
tgtttgcttccatcctggatttcaaaggctgcttctcggcaaagaagaggcagagctggt
cgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgccttagct
gattatcagttacctgaacttttgaggacgccattgcagtctttatgtttacaaatcaaa
agtttgcaacttggaagtatttcagagttcctatctaaggccttacaggcgccagaacat
ctatcggttcaaaatgctattgagtatttgaagattattggggccttagatgataatgaa
gatctgacagtgttaggacgccacctgtcaatgcttcctgttgagcctaaacttggaaaa
acgctcatattaggggctatcttcaactgtctggatccagtaatgactgttgttgcaggc
cttagtatgagagatccattcctgatgccatttgacaaaaaggatcttgcagaatcagca
aaagcacagttctctgcccgtgataacagtgatcatcttgctcttgtccgagcttatgat
ggttggaaaaatgctgaaagagtgcagtctggtaatgagtactgctggaggaattttctt
tctgcacaaactctaaaatccattgactctcttcggaagcagttcttctttttgctcaag
gatactggtctggttgatcatcatacagaaacttgtaatacatggagccatgatgaacac
cttgtccgagcagtcatctgtgccggattatttcctggaatatgctctgttgtgaacaaa
gagaagtcgattgtgctgaaaacaatggaagatggacaagtaatgctatactcgaattct
gtcaatgctggggtacccaaaattccatacccatggctagttttcaacgaaaaggtgaaa
gtgaattcggtatttcttcgggattcaactggtgtatctgattctgtgctccttttgttt
ggaggcaacatctccaggggcgggctggatgggcacctgaagatgttgggaggatatttg
gagtttttcatgaatcctgcattagcaaatacatatattttcttaaaaggggagcttggc
gaactgattcataataagctcctcaatcccaaattggatatgcagtctcatactcacctc
ttatcagcgctaagattactggtctcagaggaccaatgtgagggtagatttgtctttggc
cgcaaggtgccagtaccctcaaagaaggcaacaaaagagattaaacctggcaccttgacg
gttggtgataaaggtgggcctaataataattccaaaaatcagctgcaaactttgcttgtc
agagccggacatgatgcacccacctacaagacaaaacaattgaaaaacaaccagttctgt
tctacagtgatcttcaatgggttgaactttgtagggcagccttgcaatagtaagaaacaa
gcagagaaagatgcagctgctgaggctgtgctttggttaaagggtgagaggcattcatct
tccacagatattgaccatatgtcaatgcttctaaagaagagtaaaaagacaagccagaaa
aggacttcatttgatagtgctaagtggggttaa
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