Prunus avium (sweet cherry): 110748314
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Entry
110748314 CDS
T05161
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110748314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110748314
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110748314
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110748314
RNA polymerase I system
110748314
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
110748314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW
Spt5_N
KOW4_SPT5
KOW5_SPT5
DUF2187
Arylesterase
DUF4438
Motif
Other DBs
NCBI-GeneID:
110748314
NCBI-ProteinID:
XP_021803999
UniProt:
A0A6P5RLY9
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MHRHRPLRLQEDEQEEDVEALERRIQARYARSSSSHAEHDEEETTDVVVNQQALLPCVRD
PKLWMVKCAIGREREAVVCLMQKHIDKPKLNIKSAVALDHLKNFIYIEADNEAHVREACK
GLRNILALHKVNRVPIGEMTDVLSVESKAIDVSRGTWVRMKMGTYKGDLAKVVGVDDVRQ
RVRVKLIPRIDLQAIAKKLEGRQVVKKRAFVPPPRFMNIDEARQLHIRVERRRDPVTGDY
FQSIDGMLFKDGFLYKAVSMKSISSQNIRPTLDELEKFRKPGENGARLSTLFSNRKKGPF
MKGDTVIVVKGDLKNLKGRVEKVEEEIVHIRPEMKQLPKTLALNEKELCKYFEPGNHVKV
VSGTLEGATGMVVKVEQHVLILSDITREHIPVFADDVVESSEVTSSSCYSDAGASTRLSK
STWAR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgtcatcgtccattgcggctacaagaagatgagcaagaagaagatgttgaagcg
cttgagagaagaattcaagcgcggtatgcaaggtcatcatcgagtcatgcagaacacgac
gaggaggagacaactgatgtggtggtgaatcagcaagctcttttaccttgtgttagggac
ccgaagttgtggatggtgaaatgcgcgatcggtcgtgagcgagaggcagttgtttgctta
atgcaaaagcatattgataaacctaaactgaacatcaaatctgctgttgccctagaccac
ctcaaaaactttatatacattgaagccgacaacgaagcccatgtgagggaggcttgcaag
ggtctgcgcaatatacttgccctacataaggtaaatcgtgttccgatcggagaaatgact
gacgttctttcggttgaaagcaaggcaattgatgtttctaggggtacatgggtcagaatg
aagatgggaacatataaaggagaccttgccaaggttgtgggtgtcgatgatgtgcggcag
agagtcagggtaaaattaattccaaggattgacttacaagctattgcaaaaaaactggag
ggcagacaagttgtgaaaaagagggcatttgttcctcctccacgctttatgaatattgat
gaagcaagacaactgcatattcgtgtagagcgtagacgagatccggtgactggtgattac
tttcagagtattgatggcatgctgtttaaagatggcttcctgtacaaggcagtatcgatg
aaatcaattagctctcaaaacatacgtcccactttggatgaacttgaaaaattccggaaa
cccggggagaacggtgcccgtttgtcaactttattttcaaacagaaagaagggacccttc
atgaagggtgatacagttattgttgtcaagggagatcttaaaaatttgaaaggacgggtt
gagaaagttgaggaagagattgttcatatcaggcccgaaatgaaacaacttccaaaaact
cttgccttaaacgaaaaagagctttgcaaatacttcgaacctgggaatcatgtgaaagtt
gtatctggtactctggaaggtgcaactggtatggttgttaaggttgagcagcatgtgctc
attttatctgatataacaagggaacatatccctgtgtttgctgatgatgttgtggagagt
tctgaggtgacatcttctagttgctattctgatgcaggagcatctacaaggctctccaag
agtacttgggcccgttag
DBGET
integrated database retrieval system
