Prunus avium (sweet cherry): 110749301
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Entry
110749301 CDS
T05161
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110749301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110749301
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110749301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
PAC1
AAA_29
Motif
Other DBs
NCBI-GeneID:
110749301
NCBI-ProteinID:
XP_021805072
UniProt:
A0A6P5RR63
LinkDB
All DBs
Position
Unknown
AA seq
1274 aa
AA seq
DB search
MSRRRSNGHSPLINQQRQITSFFSKTTSSPSPISAKSKQTQNPNPSPTTPSPLQSKPKPK
KSHGQEVVGKRIRVYWPLDNIWYEGYVKLFSKDNGKHLVQYDDAEEELLDLGKEKIEWVQ
ETVKTLKRLRRGPLSTSNEVVVDGHVVMEDEDEDKEGSNDVADDDSSDEDWGKSGDKDLV
AEGAEVAEEEEELMELEDEEDDEVPTTSTNKGKRGLRSKRKLKGGGNLGSAKKIKCDKYV
MEPTPNAESTKVANGMNTVLSGDASARFIVREAEKLHFLGEERRDAKKXCPGDAKYDPRT
LYLPPDFLKSLSGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELGLQYMKGE
QPHCGFPEKNFSMNVEKLARKGYRVLVIEQTETPEQMELRRKEDGSKDKVVKREICAVVT
KGTLTEGEMLSANPDASYLMAVTENFQNVANQNTERIFGVCVVDVATSRVILGQFGDDLE
CSALSCLLSELRPVEIIKPVKLLGPETEKVLLRHTRSPLVNELVPLLEFWDAERTAQEIR
NIYRCTVDQLVSGSPKTSNLHANDSHLEDDDLGCLPDVLSELMRTGENGIFALSALGGVL
FYLKQAFLDETLLRFAKFELLPSSGFGDIVSKPYMVLDSAALENLEIFENSRNGDSSGTI
YAQLNHCVTGFGKRLLKTWLARPLYHVELIKERQDAVASLQGVNLPYALEFRKAMSRLPD
MERLLARVFSSSKACGRNANKVVLYEDAAKKQLQEFISALHGCELMVQTCCSLGVILEHV
ESRQLHHLLTPGQGLPDVNPILKHFKDAFDWVQANSSGRIIPHEGVDIEYDSSCEKVKEI
ESHLTKYLQEQRRLLGNKSITYVTVGKDSYLLEVPESLRGSIPRDYELCSSKKGIFRYWT
PNIKKSLTELSEAETDKESSLRSILHRLIGQFCEHHLKWRQLVSVTAELDVLISLAIASD
YFEGSSCRPVIMSSSCANEVPHFSAKSLGHPVLKSDSLGKGTFVSNDITIGGSGHASFIL
LTGPNMGGKSTLLRQVCLAAILAQLGADVPAESFELSPVDRIFVRMGARDHIMVGQSTFL
TELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVYKVRCRGMFSTHYHR
LAVDYQNNPEVSLCHMACQVGNGDGGVEEVTFLYRLTPGACPKSYGVNIARLAGLPISVL
QKAAAKSKEFEATYGNHRKADSFFFQSPVDNMVSCIQELIIAVEKWTSHESTKSIDIDSL
TGVWHRARILEQQS
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtcgtcggagcaacggccattccccattgatcaaccaacagcgccaaatcact
tcattcttctccaaaaccacttcttccccatcccccatctctgccaaatccaaacaaact
caaaaccctaaccctagccccaccactccttcgcctctccagtccaagcccaagcccaag
aaatcccatggccaagaggttgtcggcaagaggatcagggtttactggccgttggataat
atctggtacgaaggttatgtgaagttgttcagtaaggataatggtaaacatttagttcag
tacgatgatgctgaagaggagttgttggatttgggaaaggagaagatcgaatgggtccag
gaaaccgtcaagaccttgaaacgtttgaggcgaggccctttgtcgacttccaacgaggtc
gttgtggatgggcatgtggttatggaggatgaggatgaggataaggaaggcagcaatgat
gttgctgacgatgattccagcgacgaggactgggggaagagtggggacaaagacctagtt
gctgagggtgctgaggttgctgaggaggaagaggagcttatggaattggaggatgaggaa
gatgatgaagtccccacaacaagcacgaacaaaggaaagcgaggcttgaggagtaaacga
aagttgaaaggtggggggaatttggggtctgctaagaagatcaagtgtgataaatatgtg
atggagcctacccctaatgctgagagcacgaaggtggctaatggtatgaatactgtttta
tctggtgatgcctcagcaaggtttatcgttcgtgaagctgaaaagttgcacttcctgggg
gaagagcgtagggatgccaaaaaatgatgtcctggagatgcaaagtatgatccaagaact
ctttacttacctcctgatttcttaaagagtttgtcaggtggccagagacaatggtgggag
tttaagtcaaagcacatggacaaagttctctttttcaagatgggcaaattttatgaactt
tttgaaatggatgcacacataggagcaaaagaacttggtctgcaatatatgaagggtgaa
caaccccactgtggattcccagagaagaatttctcaatgaatgtggagaaactggctagg
aaggggtatcgagttcttgttatagagcagacagaaacacctgaacagatggagcttcgt
cgcaaagaggatggctctaaagataaggttgtgaaacgtgaaatatgtgcagtggttaca
aaaggaactctaactgagggagagatgctgtcagcaaaccctgatgcttcttatctaatg
gcagtgactgaaaactttcagaatgtggcaaaccaaaatacagagcggatttttggggtt
tgtgtagttgatgttgctaccagccgcgtcattcttgggcagtttggagatgatttagag
tgcagtgccttgtcttgtctcttgtccgagctgaggcccgtggaaattataaaacctgta
aaactacttggtcctgaaacagagaaagtactgctaaggcatacaagaagtccactagtc
aatgagttagttccacttttagaattctgggatgctgagagaactgctcaggaaattaga
aatatctacaggtgcaccgttgatcaattggtttctggttctccaaagacatccaactta
catgctaatgattctcatttggaagatgatgacttgggctgcctgccagatgtgttgtca
gagcttatgagaacaggtgagaatggcatctttgcactttcagctcttggaggcgttctt
ttttatttaaagcaggcttttctggatgagacattactccgatttgcaaaattcgagtta
cttccaagttctggttttggtgatattgtatcaaaaccatacatggttcttgactcagct
gccctagagaaccttgagatttttgagaacagcagaaatggagactcttcagggacaata
tatgcacaattgaaccactgtgttaccggatttgggaagcgattgcttaaaacatggctt
gcaagacctctatatcatgtagagttgataaaggaacgccaggatgcagttgcaagtctt
cagggagttaatcttccttatgcacttgaatttcgaaaagcaatgtctaggctgccagac
atggagcggttgcttgcacgtgtcttctctagtagtaaagcttgcgggaggaatgctaat
aaggttgttttatacgaggatgctgctaaaaaacagcttcaggagtttatttcagctttg
cacggttgtgaactaatggttcagacatgttgttctcttggagtcatcttggagcatgtt
gaatctagacaacttcatcatttgcttacaccgggtcaaggtcttcctgatgtcaaccca
attttaaaacattttaaggatgcctttgattgggtacaagccaatagttcgggtcgtata
atacctcatgaaggagttgatattgaatatgactcttcctgtgaaaaagtaaaggagata
gagtctcatttaacaaaatacctccaagaacagagaagattacttggaaataaatcgatc
acttatgtcacggttggaaaagattcttacctgttggaagtgccagagagtctgcgtggg
agtattcctcgagattatgagttatgttcatcaaaaaagggtatcttcagatactggaca
ccaaatattaagaaatcattgacagagctatcggaagctgaaactgataaagagtcctca
ctaagaagcattctgcataggttaattggacaattctgtgagcatcatcttaaatggaga
caattggtctctgtgactgcagaattggatgttttaatcagtctagcaatagcaagtgat
tattttgaaggatcgtcttgtcggccagttatcatgagttcatcatgtgctaatgaggta
ccccacttctctgcaaaaagtttgggacatccggttcttaaaagtgattctttagggaaa
ggtacatttgtctccaatgacattactattggaggttctggccatgcgagctttatcctt
ctcaccggtccaaacatgggtggaaagtcaacacttcttcgccaagtttgcttggctgct
attttagcccagttaggagcagatgtgcctgcagagagctttgagctatctcctgttgac
cgaatctttgttcgtatgggtgccagagatcatatcatggtaggccaaagtacatttctc
acagagctttcagaaaccgcaacaatgctgtcatctgctactcgtaattcattggtggca
ctggatgaacttggacgtggaacatcgacttcagatggacaagccattgcggaatctgtt
cttgaacattttgtctacaaggtccggtgtcgaggaatgttttctacccattatcatcga
ctagctgtagattatcagaacaatcctgaggtttcactctgccatatggcatgccaagtt
ggaaatggagacggaggtgtggaagaagttacatttctttacaggctgactcctggtgca
tgccctaaaagctatggtgtcaacattgcacggttagctggacttcctatttccgtcctt
caaaaagctgctgctaagtccaaggaattcgaggctacatatggtaatcacaggaaggca
gatagctttttctttcaaagtccagttgacaacatggtaagttgcatccaagagttgatt
attgctgtggaaaaatggactagtcatgagtctaccaagagcattgacattgactcccta
actggagtttggcatagagcaagaatacttgagcaacaaagttga
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integrated database retrieval system
