Prunus avium (sweet cherry): 110749841 Help Entry 110749841         CDS       T05161                                  Name (RefSeq) DNA repair helicase XPD   KO K10844   DNA excision repair protein ERCC-2 [EC:5.6.2.3] Organism pavi  Prunus avium (sweet cherry) Pathway pavi03022   Basal transcription factors pavi03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:pavi00001]  09120 Genetic Information Processing   09121 Transcription    03022 Basal transcription factors     110749841   09124 Replication and repair    03420 Nucleotide excision repair     110749841  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pavi03021]     110749841    03036 Chromosome and associated proteins [BR:pavi03036]     110749841    03400 DNA repair and recombination proteins [BR:pavi03400]     110749841 Enzymes [BR:pavi01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      110749841 Transcription machinery [BR:pavi03021]  Eukaryotic type   RNA polymerase II system    Basal transcription factors     TFIIH      110749841 Chromosome and associated proteins [BR:pavi03036]  Eukaryotic type   Centrosome formation proteins    Spindle formation proteins     110749841 DNA repair and recombination proteins [BR:pavi03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TFIIH complex      110749841 SSDB OrthologParalogGFIT Motif Pfam:  DEAD_2 HBB Helicase_C_2 ResIII DEAD NAMPT_N SNF2-rel_dom AAA_11 AAA_19 DnaB_2 Motif Other DBs NCBI-GeneID:  110749841 NCBI-ProteinID:  XP_021805734 UniProt:  A0A6P5RRQ4 LinkDB All DBs Position Unknown AA seq 759 aa AA seqDB search MKFQVEDVTVYFPYDNIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT LSKPQNPVKLIYCTRTVHEMEKTLAELKVLHNYQVKHLGPQAQILAVGLSSRKNLCVNPT VVAAENRDSVDAACRKLTASWVRALAAENPNVPTCEFFEQYEKAGSGAVLPPGVYTLQDL RAYGKQRGWCPYFLARHMVQFSNVVVYSYQYMLDPKVAGIISKEMQKESVVVFDEAHNID NVCIEALSVSVRRQTLEGARRNLSKMQHEIERFKATDADRLRKEYNRLVEGLAQGGNLPI TDTWLQNPALPEDILKEAVPGNIRKADHFVHVLRRLVQYLEGRLETENVEKEGPVGFVAS INTHAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGVVCFFV SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFLSVA RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLREAHLNLSTDMALHIAREF LRKMAQPYDKAGSVSGRKTLLSQEDLEKMGESIADEMLR NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt atgaagtttcaagtagaagacgtcacagtctacttcccatacgacaacatatacccagag caatatgcctacatgctcgagctcaagcgagccctggacgccaagggccactgcctcctg gagatgcccacaggcacgggcaagaccatcgccctcctctccctcatcacaagttacact ctctccaagccccaaaacccagtcaagctcatctactgcactcgtactgttcacgagatg gagaagactctcgctgagctcaaggtcctccacaattaccaggttaagcatctgggtccc caagcacagatcttggctgtggggctttcgtctcggaagaacctctgtgtcaacccaact gtcgtggccgccgaaaatcgagactctgtcgacgcagcctgccggaaattgactgccagc tgggtgagagccttggccgctgagaacccaaatgtgcctacttgtgagtttttcgagcag tatgagaaagctgggtctggagcggttttgcctcccggggtttataccctgcaggatttg agggcgtatgggaagcagagagggtggtgtccctacttcttggcaaggcatatggtgcag ttctccaatgtggtggtttacagttatcagtatatgcttgatcctaaagtggctgggatt atttccaaggaaatgcagaaggagtctgttgtggtgtttgatgaggcccacaatattgat aatgtgtgtattgaagcgcttagtgttagtgtgaggaggcagacacttgaaggggccaga aggaatctcagtaagatgcagcatgaaattgaaaggttcaaggccactgatgcagataga ttgcgtaaagaatacaaccgacttgtcgagggtttggcacaaggaggaaacctacctatc acagatacttggcttcaaaatcccgctctacctgaagatattctgaaggaggctgtgcct ggaaatattcgcaaagcggaccattttgtgcatgtgttacgaagattggtccagtatttg gaagggcgtcttgagaccgagaatgttgagaaggaaggccctgttggttttgttgcctct attaatacacatgctggaattgaccagaaaactctgaagttctgttatgatcgcctacac tcactcatgatgacattggaaattactgacacagatgagttcttacacatccaaacaatc tgtgacttcgcgacacttgtggggacatacactcgcggtttctctattataattgaacca tttgatgagcgaatgccacatattcctgatcctgttttgcagcttagctgtcatgatgct tctcttgccataaaacctgtatttgatcgatttcaatcagttgtgattacatctggaacc ttgagcccgattgatctctacccccgtcttctcaatttccatcctgttgtcagtcgaagt tttacaatgtcattaacaagagactgcatctgcccaatggttctcacacgtggaagtgat cagcttccggtaagtaccaaatttgatatgagaagtgatcttggcgtggtaaggaactat gggaggctgctgctggagatggtttctgttgtcccagatggggttgtatgtttctttgtc agttactcttatatggatggaatagtcaatagctggaacgaaaatggaattttaaaggaa ataatgcagcacaagcttgttttcattgagacccaagatgtcgtagaaactactttggct cttgacaattaccggaaggcttgtgattgtgggagaggtgctgtctttttgtctgttgcc aggggaaaagtagctgaagggatagactttgatcgacattatggacgattggtgatcatg tttggtattccgtttcagtacacattaagcaagattttgctggcgcggctagaatacttg cgggatacctttcaaataaaggaaggagattttttgacttttgatgccttgagacaagct gctcaatgtgtaggccgagtcatccgctcaaaagcagactatggcatgatgatatttgct gacaaaagatatagccgtcatgacaagagatccaaattgcctgggtggatactgtcacat ttacgtgaagcacacctaaatttgagcacagacatggctctgcatatagcacgagagttc cttaggaagatggctcaaccatatgataaggccggtagtgtaagtggtaggaaaaccctt ttatcccaagaagacttagaaaagatgggtgaaagcatcgctgatgaaatgttgcgttaa

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