Prunus avium (sweet cherry): 110750407
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Entry
110750407 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03013
Nucleocytoplasmic transport
pavi03015
mRNA surveillance pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110750407
09122 Translation
03013 Nucleocytoplasmic transport
110750407
03015 mRNA surveillance pathway
110750407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110750407
03041 Spliceosome [BR:
pavi03041
]
110750407
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110750407
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110750407
Spliceosome [BR:
pavi03041
]
Complex C
Other components
EJC/TREX
110750407
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110750407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110750407
NCBI-ProteinID:
XP_021806423
UniProt:
A0A6P5RXH6
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEIRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRILA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatcagagacaacgatggttacgaagaggagctggtcgattatgaagaggaa
gaccaaaatgcccccaactccgtctccgccaagccctctggtgataccgttaaaaagggc
tatgttggcatccacagttcaggattcagggacttcctgttgaaaccagagcttcttcga
gcgattgtggattctgggttcgaacatccttcagaagttcaacatgagtgcatccctcaa
gctatcttaggaatggatgttatctgtcaagcaaaatctgggatgggaaagaccgccgtc
tttgttctatctacccttcagcaaatagatccagttgctggtcaggttgctgctcttatt
ctttgccacacgagagaactggcttaccagatttgtcatgaatttgagagattcagtacc
tatttgccagacctgaaggttgcagtcttctatggaggtgtcagtatcaaggttcacaaa
gacttgctgaaaaatgaatgtcctcacattgttgttggaacaccagggagaatattagct
ttggcaagagataaagagcttggactaaagaatgtcagacattttattcttgatgaatgt
gataagatgctcgagtcacttgatatgaggagagatgtgcaggagatctttaagttgact
cctcatgacaagcaagtgatgatgttttcagcaacactaagcaaagaaatccgccctgtt
tgcaagaagtttatgcaagatcccatggaaatttatgtagatgatgaggccaaattgaca
cttcatggtcttgtacagcactacatcaaattgagcgaacctgagaaaaaccgcaagttg
actgaccttcttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaaattacttgctgattgtaacttcccatctatctgcattcac
tctggaatgcctcaggaagaaaggttgaaacgttacaagaatttcaaggaggggctttca
aggattcttgtggcaacagatttagtaggaaggggaattgatatcgagcgtgttaacatt
gttattaactatgacatgccagattctgccgatacctacttacacagggttggccgagct
ggtaggtttggtaccaagggactggcaattacatttgtctcttctgcatcagactccgat
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttccggagcaaatt
gatacttctacatacatgcaagtatga
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