KEGG   Prunus avium (sweet cherry): 110750517
Entry
110750517         CDS       T05161                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03030  DNA replication
pavi03410  Base excision repair
pavi03420  Nucleotide excision repair
pavi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110750517
   03410 Base excision repair
    110750517
   03420 Nucleotide excision repair
    110750517
   03430 Mismatch repair
    110750517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pavi03032]
    110750517
   03036 Chromosome and associated proteins [BR:pavi03036]
    110750517
   03400 DNA repair and recombination proteins [BR:pavi03400]
    110750517
DNA replication proteins [BR:pavi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110750517
  DNA Replication Termination Factors
   ELG1-RFC complex
    110750517
Chromosome and associated proteins [BR:pavi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110750517
DNA repair and recombination proteins [BR:pavi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110750517
  Check point factors
   HRAD17(Rad24)-RFC complex
    110750517
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 AAA_16 Mg_chelatase AAA_assoc_2 DUF3802 AAA_5 AAA_14 nSTAND3 SLFN-g3_helicase AAA_24 ResIII PhoH AAA_2 AAA_30 Gp44_lid AAA_28 AAA_19 AAA_7 AAA_25 DUF815 NPHP3_N RNA_helicase Ribophorin_II Parvo_NS1 Cdc6_lid bpMoxR IstB_IS21 TIP49 AAA_18 DUF3853 NB-ARC ATPase_2
Other DBs
NCBI-GeneID: 110750517
NCBI-ProteinID: XP_021806545
UniProt: A0A6P5RNR8
LinkDB
Position
Unknown
AA seq 339 aa
MAPLVQSSQPWVEKYRPKQVKDVAQQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMI
SRVLHICQEEGLNLDPEVLSTLSSISQGDLRRAITYLQSAARLFGSSISKIELISVSGVI
PEEVVKSFFAACRGDNFDLANKEVNNVIAEGYPVSQMLSQLFEVVVESDDISDEQKARIC
KKMGEADKRLVDGADEYLQLLDVASSVMRAMCNMPEDFS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccactggtgcaaagctcgcaaccatgggtcgaaaaatatcggccaaagcaagtg
aaagatgtggctcagcaggacgaggtggttcgggtcctcaccaacaccctcgagacctca
aattgtccgcacatgctgttctacggtccaccaggcaccggaaaaaccaccactgctctc
gccattgcccaccagcttttcggacctgaactctacaagtctagagtgttggagctcaat
gcaagtgatgatcgtgggatcaatgttgttcggacaaagatcaaagattttgctgctgtg
gctgtgggttctgctcaacgtcaagggggttacccttgtccaccatttaagatcattatc
ctagatgaggcggattcaatgacagaagatgctcagaatgctctaagacgtacaatggaa
acgtactccaaagtcacaagattcttttttatatgtaattatatcagcaggatcattgag
ccacttgcttcgagatgtgcaaagtttaggtttaagccactttcagaagaaatcatgatc
agccgtgtattgcatatttgccaagaagaaggcctcaacctagatccggaggttctgtca
actctaagttctatctcacaaggtgatcttcgtcgggctattacatacttgcagtcagct
gcgcgcttatttggatcttccatttctaagatagagctgattagtgtctctggggtaatc
ccggaggaggttgtcaagtcattttttgctgcctgcaggggtgataactttgatttggca
aacaaggaagtcaacaatgtaatcgcagagggatatccagtctctcagatgctttcacag
ttatttgaggtggtggttgaatcagatgacatatcagatgaacagaaggctagaatatgc
aaaaaaatgggtgaagcagataagcgtcttgttgacggtgctgatgagtacctgcagctg
cttgatgttgccagcagtgtaatgcgagctatgtgtaacatgcccgaagatttctcatag

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