Prunus avium (sweet cherry): 110750785
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Entry
110750785 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110750785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110750785
03009 Ribosome biogenesis [BR:
pavi03009
]
110750785
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110750785
Spliceosome [BR:
pavi03041
]
Complex A
U1 snRNP components
U1 related factors
110750785
Complex B
110750785
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110750785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
110750785
NCBI-ProteinID:
XP_021806842
UniProt:
A0A6P5RW82
LinkDB
All DBs
Position
Unknown
AA seq
570 aa
AA seq
DB search
MSYVPPHLRSSSTTTTTTTTTETSSVTLDDQTKLSYPSSNSHFNNDKSSAASFSSFSHSN
ASRWSSGAISTANRALARPDTVVPQWKPSERVLRMKPELIEEVCLRLNLDVSVSPDSAPA
PAPIESFADMCLHPSIMKDIAYHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFA
IPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSKSLESFRTAIVVGGTNIA
EQRSELRAGVDVVVATPGRFIDHLQQGNTSVTRISFVVLDEADRMLDMGFEPQIREVMRN
LSEKHQTLLFSATMPEEIEELAQEYLTNPVQVKVGKVSSPTANVTQTLEKVSESEKTDRL
LALLVEEASRVERAGHPFPLTIVFVERKTRCDEVADALVAQGLHAVALHGGRTQGEREAA
LREFRKGTTNILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQATS
FYTDRDMFLVANIKKAIADVGSGNAVAFATGKTARRKEREAAAAQKQARVALSKCSITGP
TSVNIEDKYRFMIADSNSKREGAADSAWDD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccacacctaaggtcaagctcaacgaccaccacaaccaccaccacc
acagaaacctcatctgtaaccctagacgatcagaccaagctctcgtacccctcctccaac
tctcacttcaacaacgacaagtcgtccgctgcttccttctccagcttctcgcactccaat
gcctcccgctggagctccggcgctatctccaccgccaacagagctctcgcacggcccgac
accgtcgtccctcagtggaagccctccgaacgcgtcctccgcatgaagcctgaactgatt
gaagaggtttgtttgcggcttaatttggatgtttctgttagtccggactctgctcctgct
ccagcaccgattgagtcatttgcagatatgtgtttgcaccctagcatcatgaaagatatt
gcataccatggatacaccacgccaacatccattcaggctcaagccatgccagttgccctc
agtgggagggacctattaggttgtgctgaaactggcagcgggaaaacggctgcatttgcc
atcccaatgatacagcattgcttggctcaacctcctgttcaacgtggtgatggaccacta
gctttggtattggccccgactagagagcttgcccaacaaatagaaaaagaggtcaaagct
tttagtaaatctcttgagtccttcagaactgccatagttgtgggtggaaccaacatagct
gagcagaggtctgagctacgagcaggagttgatgtggtggttgctactcctggacgattt
atagatcatttacaacaagggaatacttccgtcactagaatttcatttgttgttctggat
gaggctgacaggatgcttgacatgggttttgaaccacagataagagaggtgatgcggaac
ctttctgaaaagcaccaaactttgctatttagtgcaactatgcctgaagagatcgaagaa
ttagcccaggaatacttaactaacccagtgcaagtgaaggtgggaaaagtgagtagcccc
acagcaaatgtaactcagactttggagaaggtttctgagagtgagaagactgataggctt
ttggctttgctcgtagaggaggcatctcgggttgaaagagctggccatccctttccctta
actatcgtatttgttgaaaggaagacaagatgtgacgaagttgctgatgccttggtagca
caagggttgcatgcagttgctcttcatggtggtcgtactcagggtgaaagagaggctgct
ctacgtgaatttagaaaaggcactaccaatattttggttgccactgatgttgcatctcgt
ggtttggatgtctcaggagttgctcatgttatcaatttggatcttccaaagagcatggaa
gattatgtacaccggattggaaggacgggaagagcaggatcaatgggacaagctacttcc
ttttacactgatcgtgatatgttccttgtggcaaatataaagaaagcaattgcagatgtt
ggatctggaaatgctgtggcttttgcaactgggaagactgcaagaaggaaagagagagaa
gcagcagctgctcaaaagcaagctagggttgctctatcaaagtgctcaataacgggaccc
acatccgtaaacattgaggacaagtataggttcatgattgctgattccaacagtaaaaga
gaaggtgctgcagatagtgcttgggacgactaa
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