Prunus avium (sweet cherry): 110750979
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Entry
110750979 CDS
T05161
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110750979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110750979
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110750979
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110750979
Complex C
U4/U6.U5 tri-SnRNP related factors
110750979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_22
nSTAND3
AAA_19
PWI
Sigma54_activ_2
T2SSE
ABC_tran
AAA_7
TsaE
Sigma54_activat
AAA_30
AAA_16
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
110750979
NCBI-ProteinID:
XP_021807075
UniProt:
A0A6P5RQD6
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
METHSNLKTWISDNLMALLGYSNIVVVQFIIRLTKEATSPAGVVDKLLDFGFSSSSEIGS
FSKEIFARVHHEASEREIASLVRKLQRTYDHLDADTDDYYESMKSYSKKRRYRKRVSSEE
DEDEEMEEERRVKRRTWSDECQDSSDSEEERLRDQREREQLERNIRERERDAAAATRKLT
KERLKQREAEEAFFRTNADVEALRKVSRQVYLKKREQKKLEEIIDDLEDMNCLFEGVKLT
EAEDNELSYKKQILELVKKQSDLDKAEFSVALQRYKELSSCDKTNSFSEQKSWEDQQIGR
ATLIFGSKDKKRSISQDEYEFVFGDQIEFIKASERESTDEFDDVQPVQPVHPFESRTKST
LEKLQEERKTLPVYSYRDELLQAVEKHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIG
CTQPRRVAAMSVAARVSQEMGVKLGHEIWQAIVC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcacagcaatctaaagacatggatatcggataatttaatggccttgctcgga
tattctaacatcgtagttgttcagttcattattcggctaactaaggaagcaacatcaccg
gctggtgtggtggacaagcttcttgattttgggttttcctcatcgagtgaaatcggctct
ttttctaaagaaatcttcgcaagagtgcaccatgaagcatcagagagggaaattgctagt
ttggtgaggaagctgcagagaacatatgatcacttggatgcagatactgatgattattat
gagtccatgaaatcgtattcaaaaaagagacggtacaggaagagggtgtcgagtgaagaa
gatgaagatgaagaaatggaagaagaaagacgggttaaaagacgaacttggtcagatgaa
tgccaagatagttcagactcggaagaagaaagattgcgtgatcaaagggagagggagcaa
ttggagagaaatataagggaaagggaaagggatgcagcagcagccacaagaaagctaaca
aaggaaaggttaaaacaaagggaggcagaggaggcttttttcagaaccaatgctgatgtt
gaagctttgagaaaagtttcgagacaagtatatttaaagaaaagggagcaaaagaaactg
gaggagatcatagatgatttagaagatatgaactgcttatttgaaggtgtgaagctaacg
gaagcagaagacaatgaattaagttacaagaagcaaatattagagcttgttaagaaacag
tcagatcttgataaggctgagttctctgtggctttgcaacgctacaaggagctcagttct
tgtgacaaaacgaactcgttttcggaacagaaatcttgggaggatcagcaaattggaagg
gcaacactgatttttggttccaaagacaaaaagagatcaatatctcaggatgagtatgaa
tttgtgtttggagaccagattgagtttatcaaggcttcagagagagagagtacagatgag
tttgatgatgttcagccagtccaacccgtgcatccatttgagtctaggacgaaatcaacc
ttggagaagctgcaggaggagagaaaaacattaccagtctactcatatcgtgatgagtta
ctccaagcagttgaaaaacatcaggttcttgttattgttggtgaaactggatccggaaaa
actacacagataccccaatatctacatgaggctggatacacaaagcggggcaagattggg
tgcacgcagccacggcgagttgctgctatgagtgttgctgctagggtttctcaagaaatg
ggcgtcaagcttggacatgagatttggcaagctatagtgtgctga
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