Prunus avium (sweet cherry): 110752610
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Entry
110752610 CDS
T05161
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110752610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110752610
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110752610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_12
ARM_TT21
TPR_11
TPR_10
ARM_TT21_N
TPR_19
TPR_MalT
SRP_TPR_like
TPR_8
DUF627
HAT_Syf1_CNRKL1_C
ANAPC3
PknG_TPR
TPR_3
Motif
Other DBs
NCBI-GeneID:
110752610
NCBI-ProteinID:
XP_021808995
UniProt:
A0A6P5RVZ1
LinkDB
All DBs
Position
Unknown
AA seq
832 aa
AA seq
DB search
MASSSSSSLTVANRDGSSSASEDEAVMSVTRAYAQDALLQFQSGKFDQCLTALSECLKMK
PNDPKIFHNIGLAEFYRDGCSHPKRLLDVLNDVKKRSEELARASAEQAESGSNIGGSRGS
STMGHPFSAVYMDEFDTYVATLNIAVIWFHLHEYAKALSVVEPLFQNRGPIDEKTALNIC
LLLLDVGLACHDATKSADVLVYLEKAFGVSCMNQGDSGSTLSQQPANPVAKSPSLPTNSS
AADGPNLDSDANALESEETGEYDGAVFDMDVAQPTALLSSNDLSRNPVDISVSSVYLKLK
MQLYKVRFLLLTRNLKQAKREVKHAMNIARGRDSSMALLLKSQLEYARGNYRKAIKLLMA
SSNRTDARISSMINNNLGCIYYQLGKYHTASVFFSNALLNCSSLRKDRPLNLLTFSQDNS
LLIIYNSGMQYLACGKPLLAARCFQKAGLVFYNRPLLWLRFAECCLMALEKGLLETTLAS
SEVRVYVIGNGKWRQLVMEDGVSKNGNSGSLERGDLFLGSDQQPKLSMSLARQCLSNALY
LLNCSESSYCKNSLPSNFFLEDNELGEVASSKNSNNKNFHSIDSEASALSVGLGQSGING
DAKEQKAGTTQELVQNSLLYYADIRNKENLLLKQALLANLAYVELELENPMKALSIARSL
LELPECSRIYIFLGHVYAAEALCLLNRAKDAADHLMTYLSGGNNVDLPFSEEDSEQLQGV
RAVDYEELNGGSMSAKSSSPEYTLGIVFLKPEEALASLYVNFAALYAMQGELDQARQFVA
QALSIVPNSPEATLTAVYVDLKLGKSQEALAKLKQCSRVTFLPSGLTLNKAS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcttcgtcttcgtcattaacggttgcgaatcgggacgggtcttcttcagct
tctgaggatgaagccgtcatgtccgtaacccgtgcttacgcgcaggacgccttattgcaa
ttccagtcaggcaagttcgatcagtgcctaaccgccttgtccgagtgcctgaagatgaag
ccaaatgatcccaaaatatttcataatatcggacttgcggaattctaccgagatggttgc
tcacatcctaagaggttgcttgatgtacttaatgatgtgaagaaacgaagtgaagagctt
gctcgagcatctgcagaacaggcggagtctggtagcaatattggagggtccagaggaagt
agtacaatgggacatcccttttctgctgtttacatggatgaatttgacacatatgttgct
accttaaacattgcagttatctggttccatcttcacgaatatgcaaaggcattgtctgtc
gttgaacctctgtttcaaaatagaggacctatagatgagaaaactgctcttaatatttgc
cttttgttgctggatgttgggctggcttgccatgatgcaacgaaatctgctgatgttttg
gtttatctggaaaaagcttttggtgttagctgtatgaatcaaggagacagtggaagcact
ttgtcgcaacaacctgcaaacccagttgcaaagtctccatcacttcctaccaattcatca
gccgcggatggtcccaatttggattcagatgcaaatgccttggagtctgaggagacaggc
gagtatgatggtgctgttttcgacatggatgtagcacagccaactgctcttttatcttca
aatgatctttcaaggaacccagttgacatatctgtctcttctgtttatctgaagcttaag
atgcaactttacaaggttcggtttctgcttctcactaggaacttaaagcaagctaaacgt
gaagtgaagcatgctatgaatattgcacgcgggagagattcttctatggctctcctcttg
aagtcccagcttgaatatgctcgtggtaattatcgtaaagccatcaagttgttgatggca
tctagtaatcggacagatgcaaggatatcaagcatgatcaacaataatctaggatgcatt
tattatcagcttgggaaatatcacacagcatcagtattcttctccaacgcgttgcttaat
tgttcatctcttcggaaggacaggcctctaaatctgttaactttttcacaggacaattcc
ctcctaattatatataactctggtatgcagtacttggcctgcgggaaaccactacttgct
gctcgctgttttcaaaaggctggtttagttttctacaaccggcctctgttgtggcttcga
tttgctgagtgctgtctgatggctttagagaagggattattggaaaccactctggcatca
tcagaagtcagagtttatgtcattggcaatggaaagtggaggcaacttgtaatggaagac
ggggtttccaagaatggaaattcaggttctctagaaagaggtgatttgtttttgggcagt
gatcagcagcctaagctctcgatgtcccttgcacggcagtgtctctctaatgccctgtac
ttactgaactgttctgagtcaagctattgtaagaattctttgccctctaatttcttctta
gaggataatgaattaggtgaagtggcatcttccaagaactcaaacaacaagaactttcac
agcatcgattccgaggcatctgcgttatctgtaggcttgggccagtctggcataaatggg
gatgcaaaagagcagaaggcaggaactactcaggagcttgtgcagaactcccttttgtac
tatgcagatattcgtaacaaggaaaatctgttgctcaaacaagctcttcttgcaaatctg
gcatatgtagagttggaattggaaaatcctatgaaggccttgtcaattgcaaggtctctc
ttggaacttccagaatgttcaagaatttacatctttctaggtcatgtgtatgctgcagag
gctctctgcttgctgaacagggcaaaggatgccgctgatcatttgatgacatatttgtct
ggaggtaacaacgttgacttgccattcagcgaggaggactctgagcaattgcaaggagtc
agggctgttgattatgaagagttgaatggaggatcaatgagtgccaaaagttcttcccct
gaatacacattaggtatcgtgttcctcaagccagaagaggcactggcaagcctgtatgta
aattttgctgccttgtacgctatgcaaggtgaacttgatcaggcccgccagtttgttgca
caggcattatccatagtacccaacagtccagaagctactttgactgcagtttacgtggat
ctcaagctcggtaagtcgcaagaagctcttgccaagttaaaacagtgtagtcgagttaca
ttccttcctagtggattgacattgaacaaagcttcgtag
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