Prunus avium (sweet cherry): 110753410
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Entry
110753410 CDS
T05161
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110753410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110753410
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110753410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_SCAP
Cytochrom_D1
Ge1_WD40
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
KNTC1_N
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
110753410
NCBI-ProteinID:
XP_021810008
UniProt:
A0A6P5S890
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MENSSLEQVLQDAKLHRQVNSLIVAHLRDNNLYQAASVVASATMTSLNDEAPPNKLLELV
AKGLAVEKDEMLRGVPSSAFDLGTSIPSGYGSIPAPRTAAVDFGAVQETKGSSKSFPKHE
TRHLSEHKNIARCARFSPDGKFVATGSSDTSIKLFEVAKIKQMMLPDARDGPVRPVIRTF
YDHLQPINDLDFHPQNTVLISGSKDNTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHPSG
DFLLAGTDHPIPHLYDINTFQCYLSANAPEIDVNGAINQVRYSATGGMYVTASKDGTIRL
WDGVTANCVRSIAGAHGTAEATSANFTKDQRFVLSSGKDSTVKLWEVGTGKLVKQYLGAT
HTQLRCQAVFNDTEEFVLSIDEPTNEIVIWDALTAEKVAKWPSNHIGAFRWLEHSPTEAA
YVTCGTDRSIRFWKESL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcagcttggagcaggttctgcaagatgccaagctccacagacaagtcaat
tcgctcatcgtcgctcatcttcgcgacaacaatctctatcaggcggctagtgtcgttgct
tccgcaacaatgacatcattgaatgatgaagccccgcctaataagctccttgaactggtt
gccaagggccttgcagtggagaaagatgagatgttgagaggggttccgtcatctgcattt
gatttgggtacatcaataccttctggatatggttcaatcccagctcctcgcactgctgct
gttgattttggtgcagtgcaggaaacaaaaggctcatcaaagagcttcccaaagcatgag
acacgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgatggg
aagtttgttgctactggaagttctgacacatcaataaagctttttgaggttgcaaaaatt
aagcaaatgatgcttccagatgcaagagatggtcctgtgagacctgtcattcgcacattc
tacgaccacttacaacctataaatgacttggatttccatcctcagaacactgttcttata
tcggggtcaaaagataacaccataaagttctttgatttttccaagatgactgcaaagaga
gcattcagagtcatccaggatacacacaatgtgcgttcagtatcttttcatccttctgga
gattttcttctagctgggactgatcatccaattccacacttgtatgatatcaataccttc
cagtgctacctgtctgcaaatgccccagaaatcgatgttaatggagcaataaatcaggtc
aggtattcagctacaggtggcatgtatgttacagcttctaaagatggtaccattcgttta
tgggatggtgtaactgccaattgtgtacgctcaatagctggtgcacatggcacggcggag
gcaaccagtgcaaactttactaaggatcaaaggtttgttctctcttctggaaaggattct
actgtaaagctttgggaagtgggcactggaaaattggttaaacaatatctaggagctaca
catactcaattgcggtgtcaggctgtttttaacgataccgaagaatttgtactctccatc
gatgaaccgaccaatgagattgttatatgggatgctctgacagcagagaaagtagcaaaa
tggccttccaatcatattggtgctttccgttggcttgagcactcaccaacagaggcagca
tatgttacctgtgggactgacagatcaatccggttctggaaggaaagtctgtaa
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