Prunus avium (sweet cherry): 110753438
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Entry
110753438 CDS
T05161
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110753438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110753438
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110753438
Spliceosome [BR:
pavi03041
]
Complex C
Other components
Step II factors
110753438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
WHD_HA2
AAA_19
GIPC1_GH2
Cas3-like_C_2
nSTAND3
AAA_16
Sigma54_activ_2
AAA_30
ABC_tran
SRP54
ATPase
nSTAND_NTPase5
SLFN-g3_helicase
T2SSE
TsaE
NB-ARC
PhoH
AAA_33
Flavi_DEAD
AAA_7
Motif
Other DBs
NCBI-GeneID:
110753438
NCBI-ProteinID:
XP_021810040
UniProt:
A0A6P5RZ54
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MAVSTQVSVFDKLEYLSLVSNICTVLENHLGFADRVLAEFITEMGRNCEAVDDFRAKLKQ
NGANMPEFLLHILLEIVHNILPPKKASQKRKNSPAMAITDAMQIHRDSKEGEKRSKRQRV
DNGYEGIASGVFGAATYDDEVGLRNREEGFGEEIETELDEDPLELLRGVLSIDRSPVKIV
KNPIGSLSRAAALQSSLQKEGREIRKVQERMKRNSIPMDLNRAWEDPMAERGDRYLAQEL
RGAAAFSAFDIDKHEWKKTAYEGALSFGQRSSLSILERRQSLPIYKLKNELVNAVNENRV
LVVVGETGSGKTTQVAQYLAEAGYSTKGIIGCTQPRRVAATSVAKRVAEEVGCRLGEEVG
YSIRFDDCTGPDTLIKYMTDGMLFREILMDKNLSQYSVIMLDEAHERTVNTDVLFGMLKQ
LVKRRPDLRLIVTSATLDAEKFSRYFFNCMIFTVPGRTYPVDTLYAKQPESDYLDGAILT
VLQIHLSEPEGDILVFLTGEEEIEFACQSLYERMKELGKDVPELIILPAYGAQPSAEQSK
IFKPAPPGKRKVVVATNIAETSLTIDGIFYVIDPGFAKINVYNPKQGVDLLVVTPISQAS
ANQRAGRAGRTGPGKCYRLYTESAFHNEMSPNTVPEIQRSNLVHTTLMLKAMGINDLKSF
DFMDPPSPEALTSAMEQVKMLGALDEEGFLTKLGSRMAVLPLDPPLSKMLLASANLGCSD
EIVTIIAMLQAGNTFYRPKEKQAQADLKKAKFLQPEGDHLTLLAVYEAWKAKNFSSPWCS
ENFVQFRSLSRARDIRKQLLTVMDKYELEVVSAGKDRTMIRKAIIAGCFFHVAKKEPREG
YRTIVDKQVVYIHPSSVLFQRQPDWVIYNELVMTTKEYMREVSAIEPKWLMEQVPRFFKA
ADPTKMSNRKCQERIEPLYDRYHEPNSWRLSRRRA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttctacgcaggtcagtgtgtttgacaaactcgaatacctttctttggtctcc
aatatttgcacagtgcttgaaaatcatctgggtttcgcagacagagttttggcagagttc
ataaccgagatggggcgaaactgtgaggccgtggacgatttccgtgcaaagttaaagcaa
aacggagctaacatgcctgaatttctcctgcatatattgttggagatcgttcacaacatt
cttcctccaaaaaaggcttctcagaagcgcaagaacagcccggccatggcgatcaccgat
gctatgcaaattcatagagatagtaaagaaggagaaaaaaggagcaagaggcagagggtt
gacaatggttatgaagggatcgcctctggtgtttttggggccgcaacatatgatgatgaa
gttggattgcgaaatcgagaagagggtttcggggaagagattgaaacggagctggatgag
gacccattagaacttctgcgtggagtcttatcaattgataggtcacctgttaagattgtc
aagaacccaattgggtcattgagccgtgcagctgcccttcagtcttcgcttcaaaaggag
ggtagagaaataagaaaagtgcaagaaagaatgaagcgtaattcaattccaatggatctt
aatcgtgcttgggaagaccctatggcagagagaggtgatagatatctcgcacaagagctt
aggggtgctgctgccttttcggctttcgacattgacaagcatgagtggaagaagactgct
tatgaaggagccctgagttttgggcagagatcaagcctttccattcttgaacggcgtcag
agcttaccaatctacaaattgaagaatgagctggttaatgctgtgaacgaaaatcgggtg
cttgttgttgttggtgagactggttcaggtaaaacaacccaggtagctcagtatcttgct
gaagcaggttacagcacaaagggcataattggatgtactcaaccgcgtagagttgcagcc
acttctgtagccaagagggttgctgaagaagttggttgtagattaggggaggaagttggg
tattctattcgatttgatgattgtactggaccggatactttgattaagtacatgactgat
gggatgctttttcgggagattttgatggacaaaaacctttctcagtactctgtgatcatg
cttgatgaagcccatgaaagaacggtcaatactgatgttcttttcggaatgctgaagcaa
cttgttaaaagacgacctgatcttcgtttgattgttacgtctgcaacactggatgcggag
aagttttcgaggtatttcttcaattgtatgatattcactgttcctggtagaacttatcct
gtagacacactgtacgcgaagcagcctgaaagtgattacttggatggagctatattgact
gttctgcaaattcacttgagtgaacctgaaggtgacatacttgtcttcttgactggtgag
gaggagattgaatttgcttgtcagtctctgtatgaaaggatgaaagaactaggtaaagat
gttccggaattgattatcctaccagcttatggtgcccaaccgagtgcagagcagtcaaag
atctttaagcctgctcctccagggaagcgaaaagtggttgtggctaccaatattgctgaa
acttctttgaccattgatgggatattttacgtaattgatccagggtttgcaaagataaat
gtatataatccgaagcaaggggttgatttgctggttgtaacaccaatttcacaggcatca
gccaatcaacgagctgggcgtgctgggcgtacagggccaggaaaatgttaccgcctttac
actgagagtgcttttcacaatgagatgtctcctaatacagttccagaaatccaaagatca
aatcttgtacatactacactgatgttgaaagctatggggataaatgatcttaaatctttt
gattttatggatcccccatcacccgaagcacttacgtctgccatggaacaagtgaagatg
ctaggagccttggatgaagagggatttctgaccaaattgggtagtagaatggccgtgctg
cctctggatccacccttgtctaaaatgctgcttgccagtgcgaaccttggatgcagtgat
gaaattgtgaccatcattgccatgcttcaggcaggcaataccttctacaggcctaaggaa
aaacaagcgcaagcagatttgaagaaggccaagtttctacagcctgagggagaccatctg
actttacttgctgtttatgaggcttggaaagccaagaatttttctagcccctggtgttca
gagaactttgtccagtttcggtcattgagtagggcaagggatatcaggaaacagcttctt
actgtcatggacaagtatgaattagaggttgtaagtgcaggaaaagatcgaacaatgatc
agaaaagcgattatagctggatgcttcttccatgttgctaaaaaggaaccacgtgagggt
tatagaaccatagtcgacaagcaggtagtttatatccacccaagcagtgttcttttccag
agacagccagattgggtcatctacaatgagctggtgatgaccacaaaggagtacatgcgt
gaggtcagcgctatagagcccaagtggcttatggaacaggtgccaagattctttaaggct
gcagatcctacaaagatgagcaaccgcaaatgtcaagaacgcatcgaaccgctttatgac
agatatcatgagcccaactcttggcgtctgagtagacggcgtgcttga
DBGET
integrated database retrieval system
