Prunus avium (sweet cherry): 110753514
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Entry
110753514 CDS
T05161
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110753514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110753514
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110753514
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110753514
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110753514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
110753514
NCBI-ProteinID:
XP_021810115
UniProt:
A0A6P5RZB7
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MEMESSRRPFTRSTEPVKKPRLADDRGLNPNSNPNGRAFAQRPGVANPVLSRFRVSDRDS
ESNDASRGGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGESVHAAKAIAAT
VCGNIIEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPNVHQSMRH
LFGTWKGVFPAQTLQMIEKELGFASAANGSSSGAATSRLDSQSPRPAHSIHVNPKYLERQ
RLQQPTRAKGMASDFSGAMANSIDDAERPDRVASLSAGRPWVDPTVKMHNMQRSNTDALS
ERVHEKNIGAEYGEYEYGSDLPRSSNLGIGRIGGKITEQGNDKPWYGGGSSVAESISSQR
NGFNIKHGLTNYSAPKSANADPRLKTAPAIASRSSGVLSSSWKNSEEEEFKWDDMNSRLT
DHGPPDISSNSTKDRWTSDDSEKLGFGGHFRKPKGANDFATTVDLDTSADPTEHNDLSAL
GHRMSSPWPLPDSHGVDGLTPSGTPVISSVHSERYASSLSGLSTSGDSSVARLGSRAQVA
SSRIGASSFGFGATSGPAVAVGKQKQLQSVKAASPSGQSLVHQHSPSPTSTVHHLHHHLQ
SLVEQDYLESPSLPPPDLKVSQLLGKSELGLHNHYTEDSAPIPTPNVRLGSLAKSRPQDL
HSSSSSIKNPSLPQLSTYVTPSTAGISIPDHSNLLAAETSGQSSTSSLLAAVMKTGILSD
KSITGSLPSLNLQDMGQIQSQSGVQPPLPSGPPPTQVALPGSKVASAPSSSHLSRENSPT
SSNISLKKVGHPPLPPSQPLSSSLEGTASANALTVVNNASDPISNLLSSLVAKGLISASK
SESPTPVASQMPNELQNQSVSTSVTSSVSVSPVSASPSLPVSSRTDDVSLAEPVAKTSAA
LHQSSKIETRNPIGIEFKPDKIREFHPSVIEELFDDLPHKCSICGLKLKLKERLERHLEW
HALKTPESNGSVKASRRWYADSTNWVAGKAGPPLGPEDNMSIDKPSKTMDNGEPMVPADE
SQCVCVICGDIFEDLYCQERDEWMFKGASYLSIPYGVGDLGTTEESVVKGPIVHANCIAE
NSLSDLGLASRIKLEKDV
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcgtaggccgtttaccagatcgactgaaccagtgaagaagccc
cgattggccgacgaccggggcctgaacccgaactcgaacccaaatggtcgagctttcgcg
caaagacccggtgtagctaacccagtgctgtcaaggttcagagtgagcgatagagactcg
gagagcaatgacgcgagtcgcggcgggggctatgtgccgcagccactgcagcatcaggag
cttgtgagccagtacaagacggcgttggcggagctcaccttcaattcaaagcccataatc
actaatttgacgataattgctggggagagcgtccatgctgcgaaggcgatcgcggccact
gtatgcggcaacattattgaggtttctagtgagcagaagttaccatcactttatcttttg
gacagtattgtaaagaatatcggaagggattacataaaatattttgctgccagactccct
gaggtgttttgcaaggcatataggcaggttgaacctaatgtacatcaaagcatgcgccat
ctttttggaacatggaagggagtattccctgctcagacacttcagatgatcgagaaagaa
cttgggtttgcttcagcagcaaatggttcatcctctggagctgcaacatcaagactagat
tcccagtcgccacgaccggcacatagcattcatgtgaatcccaaatatttggaaaggcaa
cgtcttcagcaaccaacaagggcaaaaggaatggccagtgacttttctggggctatggca
aactcaattgatgatgcagagaggccagacagagtagcaagtctcagtgctggacgaccg
tgggttgatcctactgttaaaatgcataatatgcagcgttctaatacagatgcactaagt
gagcgtgttcatgagaagaacatcggcgctgaatatggagaatatgaatatggttctgat
cttccaaggagttcaaacttaggaattggaagaattggtgggaagattaccgagcaagga
aatgataaaccttggtatggtggtggcagcagtgttgcagaatcaatatccagtcaaaga
aatggttttaacatcaagcatggacttacaaattactcagcacctaaatctgcaaatgct
gatcctcgtctgaagacagcaccggccattgcaagtcgaagcagcggtgtgctttctagt
agctggaagaattccgaggaagaggagttcaaatgggatgatatgaactcaaggttaaca
gatcatggtccccccgatatttctagtaactcaacaaaagatcgctggacttctgatgat
tcagaaaaattggggtttggaggccactttcgtaaaccaaaaggtgcaaatgactttgca
acaacagttgatctggatacgtctgctgatcctactgaacataatgacctatctgctctt
gggcaccggatgtcatcaccttggccgttaccggactctcacggtgtggatgggctgact
cctagtggcactcctgtgattagttcagttcattcagagcgttatgcttcaagtttaagt
gggctatcaacaagtggagattcttctgtagctaggctgggaagtcgagcacaggtagcg
tcttctcgtattggagcctcaagtttcgggtttggtgcaacatcagggcctgctgtagct
gtggggaaacagaagcagcttcagtctgtgaaagctgcatcaccatctggacagtcactg
gtgcaccagcattctccctcacctacatcaacagtacatcatcttcatcatcatttgcaa
agtttagttgaacaagactatcttgaatccccatcccttcctcctcctgatttaaaagta
tctcaacttttgggaaagtcagaattaggattgcataaccactatactgaggactctgcg
cctatcccaactcccaatgtccggctgggtagcttagcaaaatcacggccacaagatttg
cattcttcatcttcatcaattaagaatccctctttgccacagttgtctacttatgtaact
ccctcaacggctggcatttctataccagatcattcaaatctccttgctgcagaaacttca
ggacaatcaagcacaagtagtttgttggctgctgttatgaagaccggaattctttctgac
aaatcaattactggtagcctacccagtttgaatcttcaggacatgggacaaattcaatca
caatcaggtgttcagccccccttgccaagtggacctccccctacccaggttgcgctccca
gggtccaaggtcgcatcagcaccttcatcaagtcacctttcccgtgagaactcaccaact
tcctcaaatatttcactgaagaaggtaggacatccgccacttccacctagccaacccctc
tcttcttctcttgagggtactgcatcagcgaatgctttaactgtggtgaataatgcctca
gatccgatttcaaaccttctaagctctttagttgcaaagggtttgatatctgcatcaaag
tcggagtcacccacccctgtggcatcccaaatgccgaatgaactgcaaaaccagagcgta
tctacatctgtcaccagttccgtgtcagtatctccagtttcagcttctccaagtcttcct
gtttcatctcgaactgatgatgtatctctcgctgaacctgttgctaaaacctctgctgcc
ttacatcaatccagcaagatagaaacaagaaatcccattggcatcgagtttaagccagat
aaaatccgagaattccatccgtctgtgatcgaggaactttttgatgaccttccacataag
tgcagcatatgcggccttaagctcaaacttaaagaacggcttgagagacacttggagtgg
catgcgttgaaaactcctgaatccaatggttcagttaaggcatcaaggaggtggtatgca
gattcaaccaactgggttgctggaaaggcaggacctcctttaggacctgaagacaacatg
tcaatagataagcctagcaagacaatggacaatggtgagcccatggttccagccgatgaa
agtcaatgtgtatgtgttatatgtggtgatatttttgaagatctttactgtcaagaaagg
gatgaatggatgttcaaaggagcttcatacttgagcattccatatggggttggtgatttg
ggaactacagaggagagtgttgtgaaaggtcccattgttcatgcaaattgtatagcagaa
aattcactctctgatttggggctggccagccgtattaaattggaaaaggatgtctag
DBGET
integrated database retrieval system
