Prunus avium (sweet cherry): 110753892
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Entry
110753892 CDS
T05161
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pavi03009
]
110753892
04121 Ubiquitin system [BR:
pavi04121
]
110753892
Enzymes [BR:
pavi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110753892
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110753892
Ubiquitin system [BR:
pavi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110753892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
UBC_like
LTN1_E3_ligase_6th
zf-RING_2
zf-rbx1
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-C3HC4
zf-RING_16
zf-C3HC4_2
ParcG
IBR_1
RINGv
zf-RING-like
zf-RING_4
C1_1
Motif
Other DBs
NCBI-GeneID:
110753892
NCBI-ProteinID:
XP_021810568
UniProt:
A0A6P5S9T9
LinkDB
All DBs
Position
Unknown
AA seq
1908 aa
AA seq
DB search
MGKQKGEAARSKARPSSSSLAASLVPSGSTGSVGFGGYVGGSRLEASLATEDSKPYVDVD
SELALHLKRLARKDPTTKLKALASLSTLLREKSTKDIIPIIPQWAFEYKRLVVDYNREVR
RATHDTMNNLVTAVGRDLAPQLKSLMGPWWFSQFDPVSEVSQVAKRSLQGAFPAQEKRLD
ALILCTAEVFMYLEENLRLTPQSMSDKATALDELEEMHQQVISSSLLALATLLDVLVSLQ
AVRPGTENITAQPKHALKARETAISFAEKLFTAHKYFLDFLKSPISAIRSATYSVLSSFI
RNIPHAFNEGNIKALAAAIFGAFQEKDPACHSSMWDAVLLFSKRFPDSWTSINVQKIVLN
RFWNFLRNGCFGSPKISYPALVPFLDTVPSNAVVGDTFLLEFFQNLWAGRNTSHSSNADR
LAFFGAFKDCFLWGLRNASRYCNTVDSVSHFQVTLVKNVLVKLLWHDYLFSSSSKHKEKT
FSSLSADSCESGLTSNKKTVETMNIMYPMSYLQELGNCIVGILSGIYLLEHDLLTAFSAE
FQESCVGLFHNAGNLETESECAERVNQFISLLGEYAMQKGRSWPLVCLVGPMLAKSFPLM
RSHDSPSCVKILSVAVSVFGSRKIVQQLLVQHNLSSCSHSTDGGDKEIEADLFMQMFKES
IVPWCLRGNSCSLSARLDMLLALLDDEYFSEQWDTVIRYATNLEHSGSATSSLDSDRITM
LAMLLEKARDKIANRKGGDVSMVNPDHWHHELLESAAVAVACSPPAFGTSNSQFVCTVVG
GSTKNNQTSFVSRDALVLIFEEVFKKLLSFILASSFTWVRNAGPLLSPNLLTAGANNIGP
EFESSVTMFEMAQFALEVLDGTLFSLKTLGEESGLVSVILSAIFLIDWEFLVLVTIRDDA
PDDESKEKLKSRLVFSELFHAFRCKISNQFWKSLSLHNRQALGSSLIQCMRSAIFNEDKL
DTEKFTSLCCLWMLEVLDCLSQDQYEEQNLLDQLLCRGERWPFWIVPDFSSPEGLVAKNF
SADVHDFGHQKFVSFIVKIISELGIDRVVAGHVKRSLPPSQETANEEHTRSWLAAEILCT
WKWPGGCAVASFLPSLSAYAKSRNYSSQESLLDFVFNILLDGALIHGGCGAQNFVYLGPA
SSEEVEDIEEPFLRALVAFLLTLFKDNIWETEKAMMLFELLVNKIYVGEAINMNCLRILP
LIVNVLIRPLSQRSIRSHDSSRDTQPDSSGENHVPDIIAGWLQKAISFPPLITWQTGQDM
EDWFQLVISCYPFSTLGGLQTPTLERNISSGESTLLLELFRKQRGPGTSTVINQLPVVQT
LLSRLIVVSVGYCWKEFDEDDWEFVLYQLRRWIQSAVVMMEEIAENVNDTITSSFTSHNL
DSILNKLGTILYISDPFPIEIAKNALLSFSLCCGPFGLRQAEDADNINPLRMERWDPIKD
RILEGILRLFFCTGIAEAIASSCCDEAASLISLSRFEHAHFWELVASSVVNSSTNARDRA
VKSVEFWGLSKGPISSLYAILFSSKTVPLLQFAAYSIISSEPVLHLAIVEDKTYLDGVTN
SEEDSSPHDMSTETSIHLKEEISCMIEKLPHKVLEMDLVAEQRVHVFLAWSLLLSHLWSL
PSSSPERERLVQYIQDSADSVILDCLFQHIPLELGMAHVIKKKDIELPAGIAEAAAAATR
AITTGSLLFSVQSVWPVEPVKMASLSGAMFGLMLRILPAYVRQWFSDLRDRSTLSGIESF
TRAWCSPPLIVNELSLIKKNDLADENFSISVSKSANEVVATYTKDETGMDLVIRLPSSYP
LRPVDVDCMRSLGISEVKQRKWLMSMSSFVRNQNGALAEAIKIWKSNFDKEFEGVEECPI
CYSVIHTTNHGLPRLPCRTCKHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacagaaaggagaagccgctaggagcaaggcacgcccttcaagtagcagtctg
gcggcgtcgctggtgccgtcgggttctactggctcggtgggcttcggcggctatgttggc
ggttctcgcctcgaggcttctcttgcaactgaagactcaaagccctatgtggatgtagat
agtgaattggctctacacttgaagaggcttgcaaggaaagatcccaccaccaagcttaaa
gctttggcatctctatccacgctgctcagggaaaagtccacaaaggacataataccgatc
attccacaatgggcatttgaatacaaaaggcttgtggtggactacaatagagaagttcgg
cgagcaactcatgatactatgaacaatcttgttaccgctgttgggagagacttagctcca
cagctgaagtctctgatgggaccatggtggttttctcaatttgacccagtttctgaagtt
tctcaagttgcaaagcgttcattacagggagctttcccagctcaggaaaagagactagat
gctttaattttatgcacagcagaggtttttatgtatttggaagaaaatctgagacttaca
ccgcaaagtatgtctgataaagcaactgctttggatgaattagaagagatgcatcagcag
gtgatatcttcatcacttctggcattggctacacttcttgatgtattggttagcttacaa
gcagtaagaccaggcactgaaaacataactgctcaaccaaaacatgctttgaaggctagg
gaaacggctatttcttttgctgagaagttgttcactgctcataaatattttctagacttc
ttgaaatctccaatttctgctatccgttcagccacatattctgtattaagtagtttcatt
agaaacattcctcatgcctttaacgaaggaaatataaaagctcttgctgctgcaatattt
ggtgcatttcaggagaaggatcctgcttgtcattcatcaatgtgggatgcagttttgcta
ttttctaaaaggtttcctgacagttggacttccattaatgtacagaaaattgtacttaat
cgattttggaattttcttagaaatgggtgctttggatctccgaagatttcttatccagcc
ttggttccattcttagacactgtgccatctaacgcagtagtgggagatacctttttgctt
gaatttttccagaacctatgggcaggaaggaatacatcccactcctcaaatgcagataga
ctagcattttttggggcatttaaggactgctttctgtggggattgcgtaatgcatcaaga
tattgtaatacggtggattccgtctctcattttcaagtaactcttgttaaaaatgttctg
gtaaagcttttgtggcatgactaccttttctctagtagctcaaaacataaggagaaaacc
ttctccagtttatcagcagattcatgtgaaagtggcttaacttccaacaagaagacagtt
gaaacaatgaatattatgtacccaatgagctacttgcaagagttggggaactgcattgtt
gggattctttcaggcatttatttgctcgagcatgatctgctcacagctttctctgcagaa
tttcaggagagttgtgtgggtttgtttcataatgctggtaacttggaaacagaaagtgag
tgtgctgaacgggttaatcaatttatatcattacttggagaatatgcaatgcagaaaggt
agaagttggcctttggtttgtctagttggaccaatgttggctaagtccttcccgttgatg
agatcacatgattcaccaagttgtgtgaagattctatcggttgctgtttctgtatttgga
tcgcgcaagatagtccaacagcttcttgtccaacataatctttcttcttgtagtcattct
actgatgggggggataaagaaatcgaggcagatctattcatgcagatgttcaaggaaagt
attgttccttggtgtttgcgtgggaatagttgctccttaagtgctcgacttgatatgtta
cttgcattgctcgatgatgaatatttctctgaacagtgggatactgttatcagatatgct
actaacctggaacactctggatctgcaacttcctctttagattctgaccgcataaccatg
ttggcaatgctcttagagaaagcaagagataaaattgcaaacaggaagggaggagacgta
tccatggtcaacccagaccactggcatcatgagcttctagaatcagctgctgttgctgtt
gcttgttcccctcctgctttcggaacttctaattctcaatttgtgtgtaccgttgttggt
ggttcaacaaaaaacaatcaaacatcttttgtgtcgagagatgcattggtcctgatattt
gaggaggttttcaagaagttgctttcttttattctggcgtcctcctttacttgggtcagg
aatgcaggtcctcttttgagtcccaatctgttgactgctggggcaaacaatattgggccg
gaatttgaaagttctgtcacgatgtttgagatggctcagtttgctcttgaagtacttgat
ggcaccttattttccttgaagacacttggtgaagaaagtgggctggtttcagttatcttg
tctgcaatttttttaattgattgggagtttttggtattagtaactataagagatgatgcc
cctgatgatgaatcaaaggaaaaattgaagtccaggctggtatttagtgaattgtttcat
gcttttcgatgtaagataagtaatcagttttggaaaagcctcagcttacacaatcggcag
gcattggggagtagtttgattcagtgtatgagatctgcaatcttcaatgaagataaacta
gacacagaaaaattcacatctttgtgctgcttgtggatgcttgaagttcttgattgtctc
tcgcaggatcagtatgaggaacaaaatctgttagaccagcttctttgccggggtgaaaga
tggcctttttggattgttcctgattttagtagcccagagggattagttgcaaaaaacttc
tctgctgatgtgcatgactttggccatcaaaagtttgtttcatttattgtcaagatcatc
tcagaacttgggattgatagagttgttgctggtcatgtaaaacgtagtctccctccctcc
caggaaacagcaaatgaagagcatactcgatcctggcttgctgctgaaatattgtgtact
tggaaatggccaggaggatgtgctgttgcttcgttcttaccttcattgagtgcatatgcg
aagagtagaaattactcttcccaggagagcttgttagattttgttttcaacattttactt
gacggtgcacttattcatggaggatgtggtgcacagaattttgtctatctggggcctgct
tcaagtgaagaagtggaggatattgaagaacctttcttgagagctcttgtagcttttctt
ttaactttgttcaaagataatatatgggaaacagaaaaggctatgatgctatttgaactg
ctagtaaataaaatttatgttggtgaagctataaatatgaattgcttgaggattcttccc
ctgattgttaatgttcttattcgaccattaagtcaaagaagtatcagatctcatgactct
agtagagatacccagcctgattcttctggggaaaatcatgtacctgatattattgcaggc
tggctccagaaagctatatcatttccgcctctgatcacatggcaaacaggacaagatatg
gaagattggtttcagttggttatatcttgttatccttttagtacactagggggcttacaa
acaccgaccctggagagaaatatcagctctggagagagcacactcctactggaattattt
cggaagcagaggggtcctggcacatcaactgtaatcaatcagcttccagttgtgcagact
ttgctttcaaggctaattgttgtttcagttggttattgttggaaggaatttgatgaagat
gactgggagtttgtgttatatcagttaaggcgctggattcagtcggctgttgtaatgatg
gaggaaattgctgaaaatgttaatgacaccattactagcagctttacttctcataacctg
gattctatccttaataagcttgggacaattctttatatttcagatccctttcctatagaa
attgccaagaatgcccttttatcattttctctgtgttgtggaccttttggtctccgacaa
gcagaagatgcagataacataaaccccttgagaatggaaagatgggaccccatcaaagat
cgaattttagaaggtatacttcggttgttcttctgcaccggcattgcagaggccattgca
agttcctgttgtgatgaggctgcatctctaatttcgttgtctcgatttgaacatgctcat
ttttgggagttggtggcctcaagtgttgtcaactcgtcgacaaatgctagagatagagca
gtgaaatcagtagaattttgggggctgagcaaaggacccattagctctttgtatgcaatt
ctattttcttcgaaaaccgttcctttgttgcagttcgccgcttattctattatttcttca
gaacctgttttacacttggcaattgttgaagacaaaacttatttggacggtgtcactaac
agcgaagaagattcatcccctcatgatatgtcgacagaaacaagcatccatttgaaagag
gaaatatcttgcatgattgaaaagttaccgcataaggttcttgaaatggatttggtggca
gagcaaagggtacatgttttccttgcatggtctttgttgctatcgcatttgtggtcgtta
ccatcgtcatcacctgaaagggagagactggtccagtatatacaagattctgctgattca
gtgatattagattgccttttccagcacattcctctagaactaggcatggcacatgttatt
aagaagaaagatatagagcttcctgctggtatagcagaagctgcagctgcagcaacacgt
gccataactaccggttcattattgttttctgtacaatctgtgtggcctgttgaaccagtg
aaaatggcttcgctttctggagcaatgtttggtttgatgcttcgcattcttcctgcttat
gtaagacagtggttcagtgatttacgtgaccgttctacgttatctggaattgaatccttt
acaagagcatggtgcagtccaccactcatcgtaaacgaattaagcctgattaaaaagaat
gatcttgctgatgagaatttttccattagcgtaagcaaatcagcaaatgaggttgttgct
acctatacaaaggatgagactggaatggatctagttatccgtcttccttcatcttaccca
ttacggcctgttgatgttgattgtatgaggagccttggtattagtgaagtgaagcagagg
aagtggttaatgtctatgtcgtcgttcgttcgtaatcagaatggagctttagcagaagct
atcaagatatggaagagcaactttgacaaggaatttgaaggcgtggaggaatgccctatc
tgttacagtgtcatccatactacaaaccatggccttcctcgccttccatgcaggacctgc
aagcacaagttccattctgcctgcctctataagtggttctcaacttctcacaagtctacc
tgccctttgtgccagtctccgttttga
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integrated database retrieval system
