Prunus avium (sweet cherry): 110754133
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Entry
110754133 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 27
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110754133
03009 Ribosome biogenesis [BR:
pavi03009
]
110754133
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110754133
Spliceosome [BR:
pavi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110754133
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
90S particles
Helicases
110754133
Pre-60S particles
110754133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Helicase_C_2
DUF6442
Motif
Other DBs
NCBI-GeneID:
110754133
NCBI-ProteinID:
XP_021810853
UniProt:
A0A6P5SAN6
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MTDVIPYASPDDETKKKKRKRNRGKKQSESADTEQAEPQNPNPAKQEEEEEKIEKEEKGE
VEEQAKDEEKKTKKRKSSKGEEAEAKIPSEKKVKSDGASGIMSTQSFASLNLSENTFKAI
QEMNFQYMTQIQARAIPPLLIGQDVLGAARTGSGKTLAFLIPAVELLYNIHFAPRNGTGV
VVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGSARRGEAERIVKGVNLLVATPGRLLD
HLQNTKGFIYKNLKCLMIDEADRLLEANFEEEMKQIIKYLPKDRQTALFSATQTKKVEDL
VKLSFRKDQKPIYVDVDEGRTKVTNEGLQQGYCIVPSAKRFLLLYSFLTKNLSKKVMVFF
SSCNSVKFHSELLKYVNVDCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIP
AVDWILQFDPPDEPKEYIHRVGRTARGEGGKGKALLFLIPEELQFIRYLKAAKVPVKEHV
FNEKQLKNVQSQLEKMVEGNYYLRKSAKEAYTSYLLSYNSHSMKDIFNVHRLDLQAVAAS
FCFSNPPKVNLNLDSSASKFRKKMRKVEGSRNGFSESNPYGRQKGGDDNRQFVRH
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgtaatcccttacgcatctccggacgacgagacgaagaagaagaagcgcaag
agaaacagagggaagaaacaatcagaatcggcagacaccgaacaagcagagcctcaaaac
cctaatccggcaaaacaagaagaagaagaagaaaaaatagaaaaagaagagaaaggagaa
gttgaggaacaagctaaggatgaagagaagaagactaagaagagaaagagttcgaaggga
gaggaagcagaggctaaaatccctagcgagaagaaggtgaagagtgatggagcgtctggg
attatgagcacacagtcctttgcttccttgaatttgtctgagaacactttcaaggccatt
caagaaatgaactttcagtatatgactcagattcaagccagagcaatcccaccgctcttg
atcggacaagatgtccttggagctgcaaggacaggatctgggaaaactcttgcttttcta
ataccagctgtggagctgctatataacatacattttgctcctcgtaatggaacaggtgtt
gttgtgatttgcccaacacgggaacttgcaatacagacccatgccgtggcaaaggacctt
ctaaagtatcactcacagactctgggcttggttattggtggttcagccaggagaggagaa
gcagaacgtattgtaaaaggagtaaatttattggttgcaacccctggtcgacttcttgac
catcttcagaataccaagggattcatatataagaacttgaagtgcctcatgattgatgaa
gctgacaggttattggaagcaaactttgaggaagaaatgaaacagattattaagtatcta
ccaaaggataggcaaacagctttattttcagcaacccaaactaagaaggttgaagatctt
gttaagttgtcatttcggaaagatcagaaacctatctatgttgatgtggatgaggggaga
actaaggtcaccaatgaagggctgcagcaaggttattgtattgtgcctagtgccaagaga
tttcttcttctatattctttcctgacgaagaatctttctaagaaagtgatggtcttcttc
tcttcttgtaactctgtcaaattccactccgaacttcttaaatacgttaatgtggattgc
tttgatatccatggaaagcaaaagcagcagaagaggacaactaccttttttgatttctgc
aaagcagagaaaggaatcttactttgtaccgatgttgctgctcgtggactggatattcct
gctgtggactggattttgcagtttgatcctccagatgaacccaaggaatatatccacagg
gttggtagaacagctcgaggggaaggtggaaaaggaaaggcactacttttcctcattcct
gaagagttgcaatttatacgctatttgaaggctgcaaaagtccctgttaaagagcatgta
tttaatgagaagcagctgaaaaatgtgcagtctcagctggagaaaatggttgaaggcaac
tactatctgcgcaaatcagcaaaagaggcgtatacatcttatttattatcatataattca
cactccatgaaggacatctttaatgttcaccgccttgatctgcaggcggttgcagcgtcc
ttttgcttttctaatccacccaaggtgaatttgaacttagacagcagtgcatcaaagttc
aggaagaagatgcgtaaagtagagggaagtcgaaacggattcagtgagagcaatccttat
ggtaggcaaaaaggtggagatgacaatcgacaatttgtaaggcattag
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