Prunus avium (sweet cherry): 110754162
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Entry
110754162 CDS
T05161
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110754162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110754162
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110754162
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
110754162
NCBI-ProteinID:
XP_021810890
UniProt:
A0A6P5S1K0
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MDANFEDQSKLPELKLDAKQSQGFLSFFKTLPHDPRPIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSDGLSSVSVSKNMFETIARDLLLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRVLGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKTSEIRTLHDALNRCGVMLTERKKTEFKMRDLVQDLS
RLVKGSIEPVRDLVSGFEFAAGALGALLSYAELLGDESNYGNYSIQRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRSCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSSIRLPYIKSALERYDGE
FSSLIKERYWDPLELWTDDGHLNKFIALVEAAVDLDQLENGEYMISSSYDPALSALKDEQ
ESLEHQIHNLHKETARDLDLALDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRIVEEYKNCQKELVNRVVQTTATFSEVFWSVAGLLSELD
VLLSFADLASSCPTAYTRPIITPSGEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHENGVHEANMKQIVGVANYHVSAHIDSSSHKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSATAVIPSDASEEVGSKRKREYDSDDMSRGAARAHEF
LKEFSNLPLETMDLKEALQKVSKMKDDLQKDSVNSHWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaattttgaggatcagagcaagcttcccgaactcaaattagatgccaagcaa
tctcaagggtttctctcattcttcaaaaccctcccccatgacccaagacctatccgattg
tttgatcgtcgggactactatactgcccatggtgaaaatgctactttcattgcaaagacc
tactatcgtaccactactgctttgcggcagttgggtagcggatcggatggcttatccagt
gtcagcgttagtaaaaacatgtttgagacaattgcccgcgatctactactggaaagaaca
gaccacactcttgagatttatgagggtagtggctcaagttggaggctggtgaaaagtgga
acacctggaaatctcggcagtttcgaagatgttttgtttgccaacaatgagatgcaggat
accccagtggttgttgcacttttacctaactttcgcgaaaatggttgcacagttgggtta
ggatatgttgatctaactaaacgagtacttggattagctgaatttcttgatgatagccac
tttacaaatgtggaatcagctctagtcgcacttggttgcaaggaatgccttctgccccta
gagagtggcaaaacaagtgaaattagaacattgcatgatgcattgaatagatgtggtgtg
atgttaactgagaggaagaagactgaatttaagatgagagatttggttcaggatctcagt
cggcttgtcaaaggctctattgaaccagttcgagatttagtttcagggtttgagtttgca
gctggagcattgggggcattgctctcttatgcagagttacttggtgatgagagcaattat
ggaaattatagcattcaaagatataatctagacagctatatgaggttagattctgctgca
atgagggcacttaatgtcctggaaagcaaaactgatgcaaacaaaaatttcagtttattt
ggtcttatgaatagaagttgtactgctggaatgggtaaacgattactgcacatgtggtta
aaacagcctttattagatgtgaatgaaatcaattcgaggctagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaaagaatctcagacatc
gagcgactgatgcacaatcttgagaagaaaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagacttccatacattaaaagtgccctagaacgctatgatggagaa
ttttcctcgctgatcaaggaaagatattgggatcctcttgagttatggactgatgacggt
cacttaaataagttcattgctctagtggaagctgctgttgaccttgatcaacttgagaat
ggagagtacatgatatcatctagttatgaccctgcactttctgctctgaaagatgagcaa
gagtcgctggagcatcaaatacacaatttgcataaagaaactgctagagatcttgatctt
gctctagacaaggctttaaaattagataaaggcacacaatttggacatgtcttcagaatc
acaaagaaggaagagccaaaaataaggaaaaagctcacaacacaattcattgttctggaa
acccgaaaggatggagtgaaatttaccaacacaaagcttaaaaagttaggggatcagtat
caaagaatagttgaagagtataagaattgtcagaaagagctggttaaccgagttgttcaa
actacagcaactttctccgaggtgttctggtctgtagctgggttgctttctgaattggat
gtcttacttagttttgctgatttggcttctagctgtcctactgcttacactaggccaatc
atcactccatcgggtgagggggatattatattagaagggagtagacatccttgtgtggag
gctcaggactgggtaaattttatacccaatgattgtaaacttgtgagaggaaagagttgg
ttccaaatcattacaggacccaatatgggtggaaaatctacatttatccgacaggtcggt
gtgaatattctaatggcacaagttggttcttttgttccttgtgacaaagctagcatttct
attcgtgattgcatttttgctcgcgtgggtgctggtgactgccaactacgcggagtttct
accttcatgcaagaaatgcttgagactgcatctatactgaaaggagctacagataagtca
cttataatcatcgacgagttaggccgagggacatcgacttatgatggattcggtttagct
tgggccatttgtgagcaccttgttgaagtgattaaagcacctaccttgttcgcaacccat
tttcatgaattgactgcattagctcatgaaaatggtgttcatgaggccaatatgaagcaa
attgttggtgtagcaaactatcatgttagtgcacatattgactcatcaagccacaagttg
actatgctgtacaaggttgagccaggggcttgtgatcaaagttttggtattcaggttgca
gaattcgcaaactttcctgaaagtgttgtttcccttgctagagagaaggctgctgaattg
gaggatttttcagctactgcagttattccaagtgatgctagcgaagaggttggatccaag
cgcaagagagagtatgactctgatgatatgtctagaggagccgctcgggcacacgaattt
ctaaaggagttttctaatttgccattggaaacaatggatttaaaggaggctttgcaaaag
gttagcaagatgaaggatgacttgcaaaaggattcagtaaattcccactggctccagcaa
tttttctag
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