Prunus avium (sweet cherry): 110754597
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Entry
110754597 CDS
T05161
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03013
Nucleocytoplasmic transport
pavi03015
mRNA surveillance pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110754597
09122 Translation
03013 Nucleocytoplasmic transport
110754597
03015 mRNA surveillance pathway
110754597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110754597
03041 Spliceosome [BR:
pavi03041
]
110754597
03009 Ribosome biogenesis [BR:
pavi03009
]
110754597
03012 Translation factors [BR:
pavi03012
]
110754597
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110754597
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110754597
mRNA cycle factors
Stress granule specific factors
110754597
Spliceosome [BR:
pavi03041
]
Complex C
Other components
EJC/TREX
110754597
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
90S particles
Helicases
110754597
Translation factors [BR:
pavi03012
]
Eukaryotic type
Initiation factors
eIF-4
110754597
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
NAT10_TcmA_helicase
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
110754597
NCBI-ProteinID:
XP_021811376
UniProt:
A0A6P5SCU9
LinkDB
All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MAEAPTRRGGGMTGDEKLEFVTSDGIEPIMSFDKMGLRDDLLRGVYNYGFEKPSAIQQRA
VRPIIEGRDVIAQAQSGTGKTSMIALTVCQLVDTSSLEVQALILSPTRELAAQTEKVILA
IGNFINIKAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDE
SDEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEITNKFMTEPVRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMH
GDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRS
GRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaccgacgagacgcgggggagggatgaccggggacgagaagctcgagttc
gtgacgtctgatgggatagagccgatcatgagcttcgataagatgggtttaagggacgat
ctgctccgaggcgtctacaactacggctttgagaagccctccgccatccagcaacgtgcc
gtcaggcccatcattgagggccgtgacgtcattgctcaggcccagtccggtaccggcaag
acctccatgattgccctcaccgtctgtcagcttgtcgatacctcttccctagaggttcag
gctttgatattgtctccaacaagggaattggcggcgcagacggagaaggtgatactagca
attggtaatttcataaatataaaagcccattcttgcattggaggcaaaagcgtaggcgag
gatatcagaaagcttgagtacggtgttcatgtggtgtctggaactcctggtagagtctgt
gatatgatcaagaggagaactctccgcactcgagccattaaattattaattctcgatgaa
tctgatgagatgttgagtagaggcttcaaggatcagatttacgatgtctacagatatctt
ccacctgagctccaggtttgcttaatttctgctacacttcctcatgaaattttggagata
accaacaaatttatgactgaacctgtaaggatccttgtcaaacgtgatgagttgactttg
gagggaatcaagcaatttttcgttgcggttgaaagagaagaatggaagtttgatacgctt
tgtgatctttatgatacccttacaattacacaagctgttattttctgcaacacaaagcga
aaggtggactggctcaccgaaaagatgcggagtaataactttactgtgtctgcaatgcat
ggagacatgcctcagaaggagagagatgctattatggccgagtttcgtggtggcactact
cgcgtcctgatcacaacagatgtttgggcccggggccttgatgttcagcaggtttccttg
gttatcaattatgatcttccaaacaaccgtgaactgtacattcatcggattggtcgttct
ggtcgttttggacgcaagggtgtggcaataaactttgtcaaaagcgatgatattaagatc
ttaagagatatagaacagtattacagtacccagattgacgaaatgccaatgaatgttgcg
gacttgatatga
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