Prunus avium (sweet cherry): 110755282
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Entry
110755282 CDS
T05161
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi04142
Lysosome biogenesis
pavi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
110755282
04148 Efferocytosis
110755282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pavi04131
]
110755282
Membrane trafficking [BR:
pavi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110755282
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_WDR3_1st
Beta-prop_THOC3
zf_RING_Vps8
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_HPS5
zf_RING_Vps8_fungal
WD40_Prp19
TPR_YpiA
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
zf-RING_2
Beta-prop_WDR36-Utp21_2nd
VPS18_RING_C
Beta-prop_NOL10_N
EIF3I
Phage_SSB
Motif
Other DBs
NCBI-GeneID:
110755282
NCBI-ProteinID:
XP_021812155
UniProt:
A0A6P5S571
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MAPIPPDNGVEGDDEREEEGEEEEEEEEEEEEEEDEEEEEEPRLKYQRMGGSIPTLLTSD
VATCIAVAERMIALGTHGGTVHILDFLGNQVKEFPAHTAAVNDLSFDIEGEYIGSCSDDG
SVIINSLFTDEKMRFEYHRPMKAIALDPDYAKKSSRRFAAGGLAGHLYYNTKRWLGFRDQ
VLHSGEGPIHAVKWRTSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPELLLPHLVWQ
DDTLLVIGWGTSIKITSIKTNQSRAANGTVKHVSMPMSNMNQVDIVASFQTSYFISGVAP
FGDSLVVLAYIPGEEDGEKEFSSSVPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHY
KAKDYSLAHAPFSGSSYAGGQWAEGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLQHGWHE
KALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAH
LRQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHTELLSTVKSWPPVIYSSLPVISA
IEPQLNASSMTDALKEALAELYVIDGQYEKAFSLYADLLKPDIFSFIEKHNLYDSIREKV
VQLMMLDCKQAVPLLIQNKDLITPSEVVKQLLNARDKCDSRYFLHAYLHSLFEANPHAGK
DFHDMQVELYADYDSKMLLPFLRSSQHYKLEKAYEICIGRGLLREQVFILGRMGNAKQAL
SVIINNLGDIEEAVEFVNMQHDDELWEELIQQCLHKPEMVGVLLEHTVGNLDPLYIVNMV
PNGLEIPRLRDRLVKIITNYRTETSLRHGCNDILKADIVNLLVKYYKEAIHGIYLSNEED
EARTKRNDSRASQVIEKSPGVRSMEVKSKPRGGARCCMCFDPFSIQSLNVIVFFCCHAYH
MTCLMDSTYTSGIKGTGATSSERVADNEYDDRVVEEDDDDTQSGDSRMRCILCTTAASRV
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggctccaattccgccagataacggcgtagaaggagacgatgagagagaggaagagggc
gaagaagaagaagaggaagaagaggaagaagaagaagaggaagatgaagaggaggaggag
gagccgaggctaaagtaccagcgaatgggaggcagcattcctacgctcttgacgagcgat
gtggctacgtgtatcgccgtcgcggaacgaatgatcgcgctcggaactcacgggggcacc
gttcatattctcgattttctcgggaatcaggttaaggaattccctgctcatactgctgca
gtgaatgatcttagctttgacatagaaggtgaatatataggaagctgttcagacgatggg
tctgttataataaacagcctttttactgatgagaaaatgaggtttgagtatcatcgccca
atgaaggctattgctctggatccagattatgcaaaaaaatcttctaggagatttgcagct
ggtggtttagctggtcatttatattataatacaaaaagatggctgggctttagagatcag
gttttgcattctggtgaaggtcctatacatgcagtgaagtggagaacaagtctcattgct
tgggctaatgatgcaggtgtgaaagtatacgatactgcaaatgatcagcgtataacattc
attgaaagaccacgaggaagcccacgacctgagcttttgctccctcacctagtttggcag
gacgacacattgttggtcattggctggggaacatcaatcaaaataacgtcgataaaaaca
aatcagtctagagcagccaatgggacagttaagcatgtctcgatgccaatgtctaatatg
aaccaggtggatattgtggcatcctttcagaccagctatttcatttctggtgttgctcct
tttggtgactctttggtcgttctagcctatatccctggtgaagaagacggggagaaggaa
tttagtagctctgttccatcacggcagggaaatgcacagagaccagaagtacgtattgta
acatggaataatgatgagctttcaacagatgctttacctgtacatggctttgagcattac
aaagcaaaggactattcccttgctcacgctcctttctcaggtagcagctatgctggtggt
cagtgggctgaaggtgatgaaccactgtactatattgtatccccaaaggatgtagtcatt
gcaaaacccagggatgctgaagatcatattgcttggcttcttcaacatggttggcatgaa
aaagctttggctgctgttgaagcaggccagggacggagtgaacttcttgatgaggttggt
tctagataccttgatcatttgattgtggaaagaaaatatgctgaagctgcatctttgtgt
cccaaattgttgagaggatctgcttcagcatgggaaagatgggttttccactttgctcat
ctgcgtcagcttccagtattagtcccatatataccaacagaaaacccaagactacgtgat
actgcttatgaggttgctctagtagcactggctacaaatccatcttttcatacggagctc
ttgtcaactgttaaatcttggccaccggtgatttattcttcattgcctgttatctcagcc
atagaacctcagctgaatgcatcttccatgacagatgctcttaaggaggctctagcagag
ttgtacgtgattgatgggcaatatgaaaaagcattttcactatatgctgatcttttgaag
ccagacatattttccttcatcgaaaagcacaatttatatgattccattcgggaaaaggtt
gtccaactgatgatgctagattgcaagcaggcagttcctttattgattcaaaacaaggat
ttaattactccatctgaagtggtcaaacaacttttgaatgcaagggacaagtgtgattcc
agatatttcttgcatgcatatttgcattcactatttgaagcaaaccctcatgctggaaaa
gattttcatgatatgcaggtagagctttatgcagactacgattcaaagatgctacttcct
tttcttcgtagtagtcaacattacaaacttgagaaggcatatgaaatttgtatcggaaga
ggtcttttaagggagcaagttttcattcttggaagaatgggaaatgcgaaacaagccctt
tctgtaatcataaataatcttggggatattgaagaggctgtggagtttgtaaatatgcaa
catgatgatgaactttgggaagaattaattcagcagtgtcttcataaacctgaaatggta
ggcgtgctactggagcacacagttggaaatctagatcctctatatatagtgaatatggtt
cctaatgggttggagattcctaggcttagggatcgcctagtgaaaatcatcaccaattac
aggactgaaacatctctaagacatgggtgcaatgatatccttaaggctgatattgtcaac
ctcttggtcaaatactacaaagaggcaatacatggaatttacttgagcaatgaagaagac
gaggcacggacgaaaaggaatgatagtagggcttctcaggtgattgagaaatcaccaggt
gtgagaagtatggaggttaaatcaaaacctaggggcggtgcaaggtgttgcatgtgtttc
gatcccttttctatacaaagccttaatgtcatcgttttcttttgctgtcatgcttatcac
atgacttgtcttatggattccacctatactagtggaataaaagggactggggccacttcc
agtgagagagtagcagataatgagtatgatgaccgtgttgtggaagaagatgatgatgat
acccaatcgggtgactctcgtatgcgttgtatcttatgtactactgctgctagtcgagtt
aggtga
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integrated database retrieval system
