Prunus avium (sweet cherry): 110755321
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Entry
110755321 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110755321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110755321
03041 Spliceosome [BR:
pavi03041
]
110755321
03009 Ribosome biogenesis [BR:
pavi03009
]
110755321
03016 Transfer RNA biogenesis [BR:
pavi03016
]
110755321
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110755321
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110755321
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110755321
Complex C
U4/U6.U5 tri-SnRNP related factors
110755321
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110755321
Transfer RNA biogenesis [BR:
pavi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110755321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
AAA_27
Motif
Other DBs
NCBI-GeneID:
110755321
NCBI-ProteinID:
XP_021812195
UniProt:
A0A6P5S5C4
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MEMGSLKRKSEEVEAEAEGFSQKQQKKENGCVTLDDEAAACLHDVSYPEGFVVPPSSSAS
AGEASEPAKKFKFTLDPFQSEAIKCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNNQRV
IYTSPIKALSNQKYREFKEQFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTRE
VAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQPCH
IVYTDYRPTPLQHYIFPSGGNGLFLVVDEKGKFREDSFQKALNALVPAADGAKKKDSGKW
QKGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMSKMDLNGDDEKIN
IEEIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIELLFQDGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMV
DEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADRAIP
NLEKQRKDLEQERDSIIIEEEDSVKNYYNLLQQYKSLKKELRDIVLSPKYCLPFLKPGRL
LSIQCARNDEASPSFSIEDPVTWGVVLNFQRVKNVSEDDASRKPEGSDYTVDILTRCRVG
ADGVAKKTIKIVPLKEPGEPVVVSISISQINTMSRLCMVIPNDLLSLQARENTLKRVLET
LSRFDKEKIPMLDPEEDMKIESSSYRKVSRRIEALENLFDRHEVANSPLIEQKLKVFHMK
QELAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSAEE
LTLTELMFNGVFKDIKVEEMVSLLSCFVWQEKLKDATKPREELDLLFSQLQDTARRVAEV
QLECKVEIDVDSFVSSFRPDIMEALYAWAKGSKFYEIMSVTPVFEGSLIRAIRRLEEVLQ
QLIQAAQSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgggatcactgaagagaaagtcggaggaagtggaggccgaggcagaaggattt
tcacagaaacaacaaaagaaggagaatggttgtgtaaccttggacgacgaagccgcggcg
tgcttgcacgacgtgtcttaccctgagggttttgtcgttcctccctcttcttctgcttct
gctggagaagcttcggagcccgccaagaaattcaagttcactctcgacccttttcagtcc
gaagccataaagtgcctggaaaaagccgagtcagtcatggtgtctgctcatacatcggcg
ggaaaaactgttgtggcatcgtatgccattgcaatgtctttaagaaataatcaacgggtg
atatacacttcaccaatcaaagctctgagcaaccaaaagtatagagagttcaaagagcag
ttttcagatgttgggttgatgactggggacgtaacaatagaccccaacgcttcctgcttg
gttatgaccacagaaatctggcgtagcatgcagtacaaagggtcagaggtaacacgggaa
gtggcttggatcatctttgatgaggtacattacatgcgtgatcgggagagaggtgtggtg
tgggaagagagcattgttatggctccaaagaatgctcggtttgttttcctctcagcaacc
gtgccaaatgctaaggaatttgctgattggctcgcaaagattcaccgtcagccttgccac
attgtctataccgattataggccaactcctctgcagcattatatttttccttctggaggg
aatggtttgttcttggtagttgatgaaaaagggaaatttcgcgaggacagctttcaaaaa
gctctaaatgctcttgtccctgctgcggatggtgctaagaagaaggatagtggaaagtgg
cagaagggtttgatcatgggcaaggctgccgaggaaagtgatatcttcaagatggtgaaa
atgataattcaacgacagtatgatcctgtcatacttttcagctttagcaaaagggagtgc
gaatctcttgcaatgcagatgtcaaaaatggatctaaatggggacgatgagaaaataaac
atagaagagatcttctggtctgctatggatatgctttcggatgacgataagaagttaccc
caggtttcacatatgctacccctcttgaagcgtggaattggtgtgcatcattctggcttg
cttcccattctgaaggaagtgatcgaactattatttcaggatggtctgatcaagtgttta
tttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgttgtgtttacc
aatgtccggaaatttgatggtgataagttcagatggctgtccagtggagagtatatacaa
atgagcggccgtgctggtcgccgtggtattgataaacgtgggatatgcatactcatggta
gacgagaagctggaaccatctactgctaagatgatgctcaaaggaagtgctgattgtttg
aacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagcgaagatggt
aatccagaaaatttgcttcgtaactcattctatcagtttcaagctgatcgtgccatcccc
aatcttgagaaacaaagaaaggaccttgagcaagagagggattcaattataattgaagaa
gaagatagtgtaaagaattattacaatctattacagcaatacaagagtttgaaaaaggaa
cttcgtgatattgtgctttctccgaagtactgcttaccatttctgaaacctggtaggctt
ttgtcaatccaatgtgctaggaatgatgaagcttccccctctttttccattgaagaccct
gtcacatggggagtggtacttaattttcaacgggtgaaaaatgtttccgaagacgatgca
agtagaaaacctgaaggttcagactacacagtggatatcctgacaagatgtagggtgggt
gcagatggagttgcaaagaaaaccatcaaaattgttcccctaaaagagccaggagaacct
gttgttgtttccatttccatatctcagataaatactatgagtagactttgtatggtcatt
ccaaatgatcttttgtcactacaagcccgagaaaacacactgaagagagttcttgaaact
ctttcaagatttgataaagaaaagattcctatgctagatccagaagaagatatgaagatt
gaaagtagttcatacaggaaggtgtctcgtaggatcgaggctttagagaacctctttgac
aggcatgaagttgcaaattctccacttatagaacaaaagcttaaggtttttcacatgaag
caagaattggctgccaagataaagtcgatcaagaaaacaatgcgctcttccactgcgttg
gcttttaaagatgaacttaaggcaagaaagcgggttcttcggagactaggatatgttaca
agtgatgatgttgtggagttgaagggtaaagttgcttgtgaaatcagtagtgcagaggag
ttgaccttgactgagctcatgttcaatggggtttttaaggacataaaggtggaagagatg
gtgtctcttctctcatgttttgtgtggcaggagaaacttaaggatgctacaaaaccaagg
gaagaacttgacctgctcttttctcagttacaagatacagctcggagggttgctgaggtt
cagcttgagtgcaaggtggaaattgatgttgacagctttgtgagttcatttcggcctgat
attatggaggctttgtatgcttgggcgaaagggtccaaattctacgagatcatgtcagtt
acacctgtttttgagggaagcttgatcagggctattaggagattagaggaagttcttcag
caacttatacaagcagcccagtctattggagaaactgagctcgagtcaaaatttgaggag
gctgtttcgaaaatcaagagggacattgtctttgcagcttccctatacctgtaa
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