Prunus avium (sweet cherry): 110755501
Help
Entry
110755501 CDS
T05161
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110755501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110755501
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110755501
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110755501
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110755501
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
110755501
NCBI-ProteinID:
XP_021812412
UniProt:
A0A6P5SDH3
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MEDSDGDINFDFEGGLDATAAAGPTNPGPTSNSLMQSDSGVAAVDTNPAAAAPQPNHPNP
NRSGGRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNTSNKFYQQR
NAGFPQQADKYQSAQGPNPVYQGVVGKPSTGESANVHQQQQVQQTQQQVGHTQTQNLPNG
LANQANRSAPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVIL
IFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGSAHYGRNFSVKWLKLCELSFHKTRHL
RNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSIAAESKREEEKAKGVNP
ENGGENPDIVPFEDNEEEEEEESDDEEESFGPVPGVGNEGRGRGRGGIMWPPHMPLARGG
RPMPGMQGFPPGMMGADAMPYGPAPDGFGMPNPFGVGPRGFNPYGPRFSGDFTGPTPGMM
FRGRPQQPGFPPGGYGMMMGPGRAPFMGGIGVGGANPGRPGRPTGMSPMFPPPSSQNTNR
MQKRDPRGPSNDRNERYSAGTGQGKGQETPGSAGGPDDEARYQQASKAYREDQYGAGNNS
RNDDSESEDEAPRRSRHGEGKKKGRGSEGDVTSEH
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggaagactcagacggagacatcaacttcgacttcgaggggggcctcgacgccaccgca
gcggcgggccccacaaacccgggtcccacctctaattctctgatgcagtccgactcgggc
gttgcggcggtggacaccaaccctgccgctgcggcgccacaacccaaccacccgaatccc
aaccggtcgggtgggcggagctaccgccaaacggtgtgccgtcactggctgcgtagcctt
tgcatgaagggcgaggcctgtgggttcctccatcaatacgacaagtcacgcatgcctgtt
tgccgcttcttcaggttgtacggcgagtgcagggagcaggattgcgtgtacaagcacacc
aacgaggacattaaagagtgtaatatgtacaagttggggttttgtccaaatggtcctgat
tgccggtatagacatgcaaagctgcctggacctccacctcccgtggaagaagtccttcag
aagattcagcatttgaattcttataattacaacacctcaaataaattttatcaacaacgg
aatgctggctttccccaacaagccgataagtatcagtctgcacaaggccccaatcccgtc
tatcaaggtgtggttggaaaaccttcaacaggagagtctgctaatgtccaccagcagcaa
caggttcaacaaacccaacaacaggttggccacacgcagacacaaaatctacccaatggc
ctggccaatcaggcaaatagaagtgcgcctttgcctcaaggaatatctaggtattttatt
gttaaaagttgcaaccgtgaaaatttggaattatctgtacaacaaggagtgtgggcaact
caaaggagcaatgagtccaaacttaatgaagcttttgactctgctgaaaatgttatttta
attttctcagtcaaccggactcgacatttccagggttgtgcaaagatgatgtccagaatt
ggtgggtctgttagtggagggaactggaaatatgcacatggatctgcgcattatgggaga
aatttctctgtcaaatggttaaagctatgtgaactgtcctttcacaaaactcgtcatttg
aggaacccctacaatgagaacttaccagtaaagataagtagagattgtcaagagctagag
ccctccattggtgagcagttggcttccttgctttatcttgagccagatagtgaacttatg
gcagtttcgattgcggcagagtcaaaacgcgaagaagaaaaagcaaagggagtcaatccg
gagaatggtggtgagaacccagacattgtcccatttgaggacaatgaagaggaggaagag
gaagaaagtgacgatgaggaagagagctttggtccagttccgggggtaggaaatgagggc
agaggaagaggcagaggaggaatcatgtggccccctcacatgccactagcaagaggtggt
agacctatgcctgggatgcagggttttcccccaggaatgatgggtgctgatgcaatgccc
tatggacctgcacctgacggatttggtatgccaaatccttttggtgtgggccctcgtggt
ttcaatccatatggtcccaggttttctggtgattttacagggcccacgcctggcatgatg
tttcgtgggcgaccacaacaacctggatttccacctggtggttatgggatgatgatgggt
cctggacgtgcaccatttatgggaggcatcggggttggaggtgcaaatccaggccggcct
ggtcggccaactggtatgtctccaatgtttccaccaccatcatctcaaaacactaacagg
atgcagaagagagatccaaggggaccttccaatgatcgaaatgagagatatagtgctggt
acaggccaggggaagggtcaagagactccaggttcagctggtggaccagatgatgaggca
cgttatcagcaagcatcaaaggcttaccgggaagatcagtacggtgctggtaacaactct
agaaatgatgatagtgaaagtgaggatgaggcaccgaggcggtcaaggcatggagaggga
aagaagaaagggagaggctcagaaggagatgttacctctgagcactag
DBGET
integrated database retrieval system
