Prunus avium (sweet cherry): 110755793
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Entry
110755793 CDS
T05161
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110755793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110755793
03036 Chromosome and associated proteins [BR:
pavi03036
]
110755793
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110755793
Chromosome and associated proteins [BR:
pavi03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
110755793
COMPASS/SET1 complex (yeast)
110755793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF12
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
WD_LRWD1
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
110755793
NCBI-ProteinID:
XP_021812769
UniProt:
A0A6P5SA69
LinkDB
All DBs
Position
Unknown
AA seq
340 aa
AA seq
DB search
MKTPMTQLDDETVRSMAIGAVFSDFGGKINSLDFHRKDDLLVTASEDDSVRLYDIATAKL
LKTTFHKKHGADRICFTHHPSSVICSSKYNLDATGAESLRYLSMYDNRCLRYFKGHKERI
VSLCMSPVNDSFMSGSLDHTVRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGGA
IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSSDGKSMLLTTTNNNIYILDAYGGEKRCG
YSLEPSPNVIIEATFTPDGQYVVSGSGDGNLHAWSINKRSEQVACWNSHIGVPSCLKWAP
RRAMFAAASSVLTFWIPNDSNAEPTRMDTEAGVEAEHPSQ
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgccgatgacacagctcgacgacgaaacggtgcgcagcatggccattggagcc
gttttctcagactttggtgggaagataaattcactggattttcaccgcaaggatgattta
ctggttacggctagcgaggatgattctgtgcgactctatgacattgcaactgctaagttg
ctaaagaccacattccataagaaacatggagcagatcgtatatgctttacccatcaccca
agttctgttatatgctcttcaaaatacaatctggatgccactggagcagaatcactgcgg
tatctgtcaatgtatgataatcgatgccttcgctacttcaaaggacataaagagagaatt
gtttccctctgtatgtcaccagtcaacgatagcttcatgtctggttcgttggaccacact
gtcagaatatgggatctccgtgtaaatgcctgccagggaattttgcatctacgtggtaga
cctacagttgcctatgaccagcaaggtcttgtttttgctgtggcaatggaagggggtgcg
attaaattgtttgattcacgttcctacgacaagggtccatttgatacctttttagttggt
ggagatactgctgaagtttgtgatatcaagtttagcagtgatggcaaatcaatgctcttg
acaaccacaaacaacaacatctatattctggacgcatatggaggagagaagcgctgtggg
tacagtttggaaccatctcctaacgtaataatagaggcaacttttaccccagatggccag
tatgtcgtgtcaggctctggagatggaaacttgcatgcctggagcatcaacaagcggagc
gagcaggtggcatgctggaacagtcacattggagttccatcttgcttgaagtgggctccc
cgcagggccatgtttgctgctgcatcatcggttcttaccttttggatacctaacgactca
aacgccgagccgactcgcatggacaccgaagccggtgttgaagccgagcatccttctcag
taa
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integrated database retrieval system
