Prunus avium (sweet cherry): 110757017
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Entry
110757017 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110757017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110757017
03009 Ribosome biogenesis [BR:
pavi03009
]
110757017
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110757017
Spliceosome [BR:
pavi03041
]
Complex A
U1 snRNP components
U1 related factors
110757017
Complex B
110757017
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110757017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110757017
NCBI-ProteinID:
XP_021814261
UniProt:
A0A6P5SL19
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MAATATASSGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPLKPS
SAQSISSSVHVQQSSQGRRPDEGDDRYGRGSNGGSKFDAGPRNQQSARSATVSSHNTPNG
TLSALGGSSLRGNGSSDTGIGLSAEAYSRRHEISVIGDNVPPPFTSFEATGFPSEILREV
QNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRSRNDPQLGPTV
LVLSPTRELATQIQEEAVKFGKTSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLND
ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIA
ADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTK
KMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKYASDLIKVLEGANQRVPPEIR
EMATRGGGGMNRFRRWGSGSGGRDGGRGGRNDSSYGGRDGGRGGGWGFTPSSGRYDRGHN
NGYDRGRSPDKGSGHRGSNRSRSRSLERFDKALPTGGGSAGWSFHKAMMERERSSPPPPR
SLPYGGGVDEAEEGMIPQEEEGGYHIANA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgcctctagtggtcctcgatatgctccggaggaccccactctt
cccaaaccatggagaggattggttgatggtaaaactgggtatctttacttttggaacccc
gagactaatgttacccaatatgacaggcctacgggctcagctcctccattaaagccgtct
tcggcacaatctataagttcttcagttcatgttcaacaatcttcacaaggacgtcgtcct
gatgagggagatgataggtatggcagaggcagcaatggtgggtcaaaatttgacgcggga
ccaagaaatcagcagagtgcaagaagtgcaacagtttcttctcataataccccgaatggg
acacttagtgcacttggaggatcttctctgagaggaaatggatcatcagacactggaatt
ggtttgtctgctgaggcttatagtcgtcgacatgaaatatctgttattggtgataatgtg
cctccacccttcacttcatttgaagctactggcttcccatctgagattcttagagaggta
caaaatgcaggtttttctgccccaactccaattcaggcacagtcttggccggttgctctt
caaagtagagatatagtagccattgctaaaacaggttcagggaagaccttggggtattta
cttccaggattcatccatctcaagcgcagccgtaatgaccctcagttgggtcccactgtg
ttggttttatcaccaacaagggagctggcaacacagattcaagaagaggcagtgaagttc
gggaagacctcaaggatatcttgtgtgtgtttgtatggaggagctccaaagggtccacag
ttgagagatattgaccgaggagccgatgttgtggttgccactcctggccgcttgaatgat
attcttgaaatgaagagaatcagcctccatcaagtttcgtacttagtgttggatgaggct
gaccgtatgctggacatgggttttgaacctcaaataaggaagatcgtgaatgaggtacct
gctcgccgccagaccctcatgtatacagcaacttggccgaaggaggttcgcaagattgca
gcagatctgctggtcaatcctgttcaggttaacattggcaatgtcgatgaactggttgcg
aataaatccatcacacagtatattgaagtactcgccccaatggagaaacacaggcgactg
gagcaaatattgcgatctcaagagccaggatccaaaataataatcttttgttcaaccaag
aagatgtgcgatcaactttctcgcaacctaacccgccagtttggagctgctgcaattcat
ggtgacaaatctcagagtgagagggactacgtgttgaatcaatttcgctctgggaggact
ccaattcttgtagcaactgatgttgcagctcgaggattggacatcaaggacataagggtg
gttatcaactacgacttccccactggagtggaggattatgttcacagaattgggagaact
ggaagagctggtgccactgggctggcttacacattcttcggtgatcaggattcaaagtat
gcatcagatctcatcaaagttttggaaggggcaaatcagcgtgtccccccagaaattcgt
gagatggctacccgtggtggtggtgggatgaacaggttcagacgttggggttctgggtct
ggtggccgtgatgggggtcgtggtggacgaaatgattcaagttatggtggaagggatggt
gggaggggaggcggatggggatttactccctcttctggcaggtatgaccgtggtcacaac
aatgggtatgatagaggccgaagccctgacaaggggtcaggacatagaggttctaaccgc
agccgtagtcgtagtcttgagaggttcgacaaggctctgcctacaggtggaggctctgca
gggtggagttttcataaagcaatgatggaacgtgaacggtcatcgccgccacctccacgc
tcactcccgtatggtggtggggtggatgaagctgaggaaggtatgatacctcaagaagag
gagggtgggtatcatattgcaaatgcgtaa
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