Prunus avium (sweet cherry): 110757479
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Entry
110757479 CDS
T05161
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
110757479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pavi03036
]
110757479
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110757479
Chromosome and associated proteins [BR:
pavi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110757479
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
110757479
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
HAUS-augmin3
Motif
Other DBs
NCBI-GeneID:
110757479
NCBI-ProteinID:
XP_021814785
UniProt:
A0A6P5SMG2
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MEEDEDRILLDSLGVTSANPEDIERDILSGAQNNGNASEVGGSTEEEPLERSESIDPLAA
SQAKLYNKLRAVEFEIDAVASTVEPEQAGNEGGARDGDDDGMEPGDKEDLDQAFATGLNL
QHALATDRLRSLKETKAKLEKELSDLDKQRPSKGKQRDKVLSDIVKEKPAPKRKLKQVKK
SGKNLEKRLKTVSFDEDDDFDAVLDAASAGFVETERDELVRKGILTPFHKLNGFERRLQE
LGPSQRRNVPAEEDRSNDFASASVARAVQSISEAAQARPSTKLLDPEALPKLNPPTYPFK
RLKKPLKIPQSLENDTHKNKSSRLRRKRPLPDKRWRKLSNLEEKHVHENEDTPSCEEENQ
EDVGDVDDNEYTYVTLEGGLKIPEHIFNQLFDYQKVGVQWLWELHCQKAGGIIGDEMGLG
KTIQVLSFLGALHFSGMYKPSIVVCPVTLLRQWKREAQKWYPSFHVELLHDSAQDPAGRK
KGSKSNGSDSDSEGSLDSDYEKPALSKSSKKWDSLINRVLRSESGLLITTYEQLRIVGES
LLDIDWGYAVLDEGHRIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLTELWSLFDFVFP
GKLGVLPIFEAEFSVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL
PKKTEHVIFCSLTAEQRSAYRAFLASSDVEQIMDGNRNSLYGIDVMRKICNHPDLLEREH
SGQNPDYGNLERSGKLKVVSQVLKVWKDQGHRVLLFTQTQQMLDIIESFLVSDGYSYRRM
DGLTPIRQRMALIDEFNNSSDVFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQAR
ERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLF
TLNDEGESGATETANLFGQLSEDANVVGTQNDKHNKQDSQKVSVPLANGAGADKGKNSEV
GPSRRNGKEKADHSNDEVDEETNILRCLFDAQGIHSAMNHDMIMNAHDEEKMKLDEQASR
VAQRAAEALRQSRMLRSRDSVSVPTWTGKSGMAGAPSSVRGKFGSTVNSQLINNTKRSDE
VSNNGTNGVAGASAGKALSSAELLARIRGKEEKAVEAGIEHQFGLASSSNRAKSVDVGPS
RSSHNLGGVQPEVLIRQICTFIQQSGGSTSSSSIVQHFKDRIPSRDLPLFKNLLKEIAKL
EKTPNGSVWVLKPEFHPQ
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgaagacaggattttgttggacagtttgggcgtaacgtcggcaaaccct
gaagatatcgagagagacattttatcaggggcgcagaacaatggcaatgccagtgaagtt
ggaggaagtactgaggaggagcctcttgagagatcagaaagtattgatccattggcggcc
agccaggccaaactctataacaaattgagggcagttgagtttgaaattgatgccgttgcc
tccactgttgaacctgaacaagcgggcaatgaaggcggtgctcgtgatggtgatgatgat
ggcatggaacccggggataaggaggaccttgatcaagcgtttgctactgggttgaacctt
cagcatgccctagctactgatcgactgagaagtctaaaggaaacaaaggctaaacttgag
aaagagctttcagatttggacaagcaaagaccttccaagggaaaacagcgtgacaaagtc
ttatcagatattgtcaaggaaaagcctgcacccaagaggaagttgaaacaagttaagaaa
tctggaaaaaatctagaaaagaggcttaaaacagtctcatttgacgaggatgatgacttt
gatgctgtgttggatgcagcatctgcaggctttgttgaaacagaaagggatgaattagtt
cgaaaaggaattttaactcctttccataagctcaacggctttgaacgccgccttcaagaa
ctagggccatctcagaggcgtaacgttcctgcagaagaagacaggagtaatgattttgct
tcagccagtgttgctagagcagtgcagtcaatttcggaggctgctcaagctcgcccatct
accaagctgcttgatccagaagctctaccaaagcttaatccacccacttatccttttaag
aggctgaaaaaacctcttaagattcctcaatccctagaaaatgatacacacaagaataaa
agttcaagattaagaaggaagcgccctttgcctgataaaagatggagaaagctcagtaat
ctcgaggaaaagcatgtgcatgaaaatgaagacactcccagttgtgaagaagaaaaccaa
gaggatgttggagatgtagatgataatgagtatacttatgttaccttggaaggggggctg
aaaatcccagagcacatttttaaccaactttttgactatcaaaaggtaggtgtccagtgg
ctatgggaactgcattgccaaaaagcaggcggaattattggagatgagatgggtcttggt
aaaaccatccaggtcttgtctttccttggtgcattgcatttcagtggtatgtataaacca
agcatagttgtctgcccagttacacttttgcgccaatggaaaagggaggctcaaaaatgg
tacccaagctttcatgtggagttacttcacgattctgctcaggatcctgccggtaggaaa
aaaggatccaaatctaatggaagtgattctgatagtgaaggttcactggacagtgattac
gagaaaccggcattatccaaaagctctaagaaatgggattccttgattaaccgtgttttg
aggtcagaatctgggttgctaattacaacttatgagcaactccgtatcgtaggggaaagt
ttgcttgacattgattggggttatgcagttttggatgaaggacaccgaattcggaaccca
aatgcagaaattactctagtttgtaaacagttacaaacaatacatcgtataataatgacg
ggtgcaccaattcagaacaagctgactgaactgtggtccttgtttgattttgttttccct
ggaaagttgggggtcctgcccatatttgaggctgagttttcagttcccatatctgttggt
ggttatgcgaatgcttcaccattacaagtatccacagcatacaggtgtgctgtggttttg
cgagatttgatcatgccgtatctcctccggcgcatgaaggcggatgtgaatgcccagctt
cctaagaagactgaacatgtcatattttgcagcctcactgctgagcaacgttctgcatat
agagcatttctggctagttctgatgtggaacagattatggatggtaataggaattcgctt
tatggaattgatgtcatgcgtaagatttgcaaccaccctgatctccttgagagggaacac
tccggccagaatccagattatggtaatctcgaacgcagtggaaaattgaaagttgtttcg
caagtgcttaaagtttggaaggatcaaggtcatcgtgttcttctttttacgcaaactcaa
caaatgcttgacattattgaaagttttctggtttctgatggttatagctaccggaggatg
gatggtcttactcccatcagacagagaatggccttaatagatgaatttaacaactcaagt
gatgtgtttgttttcattctgacaactaaggttggtggtttagggacaaatctgacaggt
gcaaatagggtgatcatctttgatcctgactggaacccttccactgacatgcaggcaaga
gagcgtgcttggcgtattggtcagaagcgggatgtaactgtatatagattgatcacccgt
ggaaccatagaggagaaggtgtatcatagacagatttacaagcattttctcaccaataag
atattaaaaaatccacagcagagaaggttctttaaagctcgagatatgaaggatctcttc
actctgaatgatgagggtgagagtggggctactgaaacagctaatctgttcggtcagtta
tctgaagatgccaatgttgttggtacacagaatgacaagcacaataagcaagattctcag
aaagtctccgtaccgcttgccaatggtgctggggctgacaaggggaagaactcagaggtt
ggaccgtccaggaggaatgggaaagaaaaagctgaccacagcaatgatgaagtagatgaa
gaaacaaatattctgaggtgcctatttgacgcccaagggatacatagtgctatgaatcat
gatatgatcatgaatgcgcatgatgaagagaagatgaagcttgatgaacaagcttcccga
gttgcacaaagagcagcagaagcactgcgccagtcacggatgcttcgaagccgtgatagt
gtgtctgtccccacatggactgggaaatcaggaatggctggcgcaccatcatctgtccgt
gggaaatttggttcaactgtgaattcccagttgatcaataataccaaacgctcagatgaa
gtttccaacaatggaacaaatggtgttgcaggggcatccgctgggaaggcattatcttct
gctgaattactggcaagaattcgaggaaaggaggaaaaagctgttgaagctggaattgag
catcagtttgggttggcttctagttctaacagagcaaaatctgtagatgttggaccttct
aggtcgtctcacaatttaggtggagtgcaacctgaagtactgattcgtcagatctgtaca
tttatccaacaaagcggaggaagtacaagttcttcaagcatagtgcagcattttaaggac
agaataccctcaagggatcttcccttgtttaagaatcttctgaaggaaatagccaaacta
gagaaaaccccaaacggatcagtttgggttctaaagccagagtttcacccgcagtga
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integrated database retrieval system
