KEGG   Prunus avium (sweet cherry): 110758436
Entry
110758436         CDS       T05161                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110758436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pavi03041]
    110758436
Spliceosome [BR:pavi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110758436
 Complex C
   U5 SnRNP specific factors
    110758436
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_NWD2_C Nbas_N PEP5_VPS11_N
Other DBs
NCBI-GeneID: 110758436
NCBI-ProteinID: XP_021815992
UniProt: A0A6P5SP27
LinkDB
Position
Unknown
AA seq 344 aa
MMQFAPSEGETALSIVGPRPMELSTHSARPAPGPNGKQRTSSLESPIMLLTGHQSAIYTM
KFNPAGTVVASGSHDKEIFLWNVLGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDKT
VGAWDVETGKRIKKMAEHSSFVNSCHPARRGPPLIVSGSDDGTAKLWDMRLRGAIQTFPD
KYQITAVSFSDASDKIFTGGIDNDIKVWDLRKAEVMMTLQGHQDMITGMSLSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
DTTSRRILYMLPGHTGSVNESVFHPTEPIIGSCGSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgatgcaatttgctccaagtgagggtgaaactgctttgtccatagttggtccaaggcca
atggaattgtctacgcatagtgctcgcccagcacccgggccaaatggaaaacaaaggact
tccagtttggaatcgccaatcatgttgttgacaggtcatcagagtgctatatacacaatg
aaatttaatcctgctggaacagttgttgcatctgggtctcatgacaaagaaattttctta
tggaatgttcttggggaatgcaagaactttatggttctgaaggggcacaagaatgctgta
ttggatcttcactggacaactgatgggtctcagataatatcagcgagtccagacaagact
gtgggggcatgggatgttgaaacaggaaaaagaataaaaaagatggcagaacactcatca
tttgtgaattcttgccatcctgctcgaaggggaccgcctcttattgtcagtggatctgat
gatggaactgccaaactatgggatatgcgtctgaggggtgccatccaaacatttcctgat
aaatatcaaattacagctgtcagcttctctgatgcatcagataaaatctttaccggaggc
attgacaatgatattaaagtttgggatttgcgcaaggctgaagtaatgatgacacttcaa
ggccatcaagatatgataacaggtatgtcattgagtcccgatggctcttatcttctgact
aatggaatggactgcaagctctgcatttgggatatgcgcccatatgcaccacagaatcgt
tgcgtgaagataatggaaggccaccagcacaattttgaaaagaacttgttgaaatgtagc
tggtcccctgatggaagcaaggtcacggccggaagttctgatcggatggtttatgtttgg
gatactacttctcgacgcatcttgtatatgcttcctggccacactggatctgtcaatgag
tctgtattccatcccactgaacccattattggatcttgcggtagtgataagcagatctat
ctgggggaaatctga

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