Prunus avium (sweet cherry): 110758798
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Entry
110758798 CDS
T05161
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110758798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110758798
Enzymes [BR:
pavi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110758798
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110758798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Spore_YpjB
Motif
Other DBs
NCBI-GeneID:
110758798
NCBI-ProteinID:
XP_021816410
UniProt:
A0A6P5SHI5
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MATLPPLLRRRFLSTSTNFPKKWAVKEVTKLNFKESLEEFKDHLAGSDFVAVSLQKTGSF
SAAWHRPQPFDTADTSYCKAKYAAERFQLLQFAACPFTLRASKLTPHPYNFVLFPRDELK
LGMPSYSFSVQTSHLTSMAQEGFDFNACIYNGISYLSRAQESAAKVRIGNPSPSTYIMNS
SATHTVADTVFLERIKSRVKHWKNACRSSKKDDALLSSLRKLILGNELYGSRPCMNIDVC
SERQIQLALEMLREFSDELVPLIVPAKGGGTQAVRVVLTSSKEDKDSFERELQNLEEEQN
QRVRGFREVIDLISASQKPVVSHNSINDFTFIHSKFLSPLPTNVDEFMDSLHLVFPHLLD
VNHMMKNIGPLRKVTNIHAAISYLNNHYFAPIDMENLPQENEEGTVHRHNVVKMCYLFAK
LCSILKIPDNAMTSNNALLAPAPEEYTNISNPYPDSPQESINDDIRIWTKNMKKVSCNHL
VFLWGFRSGMTAGMLKSLLHKSHDVFSEEFDVRLVDKSCAIVVFWRPGLSETFLDFVSSE
EICGSLREMVSEGLRASSYEAYKRVCRLGLWEANLAESLDKALEDQDCLVEANLAANCKE
IYWSSDSTINFDNL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcgactctgcctcctctgttacggcgacgttttctcagcaccagcaccaatttccca
aagaaatgggcggtgaaggaagtgacaaagttgaatttcaaggagtccctggaggagttc
aaggaccacctcgccggctcggacttcgtagccgtctcgctgcagaaaacggggtcgttt
tctgcggcatggcaccgtccccaacccttcgacaccgccgacacgtcgtattgcaaggcc
aagtacgccgcagaaaggttccagcttcttcagttcgccgcctgccccttcactctcaga
gcctccaagctcactcctcacccatacaactttgtattgttcccaagagatgaattgaag
ctggggatgccatcttatagcttttcagttcaaacatcacatttgacttccatggctcaa
gaaggttttgattttaatgcctgcatatataatggtatatcatacttgtccagagcacaa
gaatctgcagctaaagtgcggatagggaatccaagccccagcacctatataatgaactct
tctgcgacccatactgttgctgatacagtttttcttgaaagaattaaatcacgagttaag
cattggaagaatgcgtgtaggagttcaaagaaagatgatgctctgcttagttccttacga
aaacttatcttgggaaatgaactttatggatcaaggccatgcatgaatatagatgtttgc
agtgaacgtcaaatacagcttgcattggagatgttgagggagttctctgatgaacttgtt
cctttaatagtcccagcaaagggtggaggaactcaggctgttcgtgttgttcttacaagt
tctaaggaggacaaggactcgtttgagagagagcttcaaaaccttgaagaggaacaaaac
cagagagttcggggatttcgagaggtgatcgatttgatttctgcttcacagaaacctgtt
gtctcccacaattccattaatgatttcacgtttattcattcaaagtttctctctcccctg
ccgactaatgtagatgagttcatggactccttacacttggttttccctcacttacttgat
gtcaaccatatgatgaagaatattggccctctaaggaaggtgaccaatattcatgcagct
atttcctacctgaataatcattactttgcacccattgatatggaaaacttgccccaagaa
aatgaagaaggcacagttcataggcataatgtggtgaagatgtgttatctgtttgcaaag
ctctgctccattctgaaaattccagacaatgctatgacatctaacaatgcactgttggct
ccagcccctgaagagtatacaaacatatccaatccgtatcctgacagcccccaagaatca
atcaatgatgatatcagaatctggacaaagaatatgaaaaaagtcagctgcaatcatttg
gtattcttatggggatttagaagtggcatgactgcagggatgctcaagagcttgttgcac
aagtcacatgacgttttctcagaagaatttgatgttcggttagtggacaagagctgtgct
attgttgttttctggcgacctggtttatccgaaacttttctggatttcgtgagtagtgaa
gagatttgtggatctttaagggagatggtttcagagggcctaagagcatcgagttatgag
gcttacaagagagtctgcaggttgggcttatgggaagcaaatttagcagagtccttagac
aaagccttagaagaccaagactgccttgtcgaagctaatttagcagcaaactgcaaagaa
atctattggtctagcgactcaacaattaattttgacaacttgtaa
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