Prunus avium (sweet cherry): 110759122
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Entry
110759122 CDS
T05161
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110759122
03036 Chromosome and associated proteins [BR:
pavi03036
]
110759122
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110759122
Chromosome and associated proteins [BR:
pavi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110759122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
HTH_44
Tex_central_region
HHH_3
SH2
MRP-S34
DHQS
Motif
Other DBs
NCBI-GeneID:
110759122
NCBI-ProteinID:
XP_021816843
UniProt:
A0A6P5ST43
LinkDB
All DBs
Position
Unknown
AA seq
1633 aa
AA seq
DB search
MGKAVVSDEEDEVELDEDEREPLHGDAVDDRDGDDEEDEDEGPDEYEKDDFIVDDVDEEE
EQEEEEDRADSDEERQRKKKRKKKEEYVLDEDDYELLEDNNVIAPRRKAGKFKRLKKAQR
HGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEGPPLEDIAEEEEPAEAEDDGEV
GEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVSSSALQEAHEIFGDVDELLQLR
KQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELDVPERMQIYEESTGSPPLDRIS
IDDESTWIYNQLASGTVHSFSKTGLGNSISRDDIIRFLDLHHVQKLDIPFIAMYRKEECL
SLLKDPEHLELEDESQDKNDRPSVLKWHKVLWTIKELDRKWLLLQKRKNALQSYYNKRFE
EESRRIYDETRLNLNQQLFESIMKSLKAAESEREVDDVDTKFNLHFPPGEAGVDEGQYKR
PKRKSLYSICSKAGLWEVASKFGYSSEQFGLQLSLEKMRMDELEDAKETPEEMASDFTCA
MFENPQAVLKGARHMAAVEISCEPCVRKYVRSNYLDIVELSTSPTPDGNVAIDAFHQFAG
VKWLQRKPLNRFEDAQWLLIQKAEEEKLLQVTIKLPEDRLNKLISDFNEYYLSDGVSKSA
QLWNEQRKLILQDALFNFLLPSMEKEARSLLTSRAKNWLLMEYGKVLWNKVSVGPYQRKE
NDSSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSHNVNDQQRKKND
QERVLKFMTDHQPQVAVLGAVNLSCVRLKDDIYEIIFKMVEENPRDVGHDMDGLSIVYGD
ESLSRLYENSRNSSDQLPAQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPFE
NFLTPDEKYAMVEQVMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVR
SGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQ
ELAKDVYDVDGGNDEEDALEMAIEHVRDRPNYLKNLDVEEYAKTKKRENKIETFCDIRRE
LIQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQAQRAICALESGLTG
MLMKEDYSDDSRDISELSDRLNEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRHQNTQN
VDAYYHEDRRSLQSEQEKAHKEKELAKKHFKPRMIVHPRFQNITADEAMKFLSDKDPGES
IIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKDHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVAHLKSMLNYRKFKRGTKAEVDELLKIEKLEYPMRIVYCFGISHEHPGTFI
LTYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVGYFQRHIDDPQHESGPSIRSVAAMV
PMRSPATGGSTNEGGWRGQSFDRDRSSTPSSRTGRNDYRNGGSRDGHPSGLPRPYGGRGR
GRGTYNNRGNSTGNERQDSGYDAPTWGADSKDRDDGLGNFPGAKVQNSPGREAFPGGWGA
GGSGSGGSSWGGGSGSGWGQGSGGAGGWGGAGANDAAADNGTTGWGSDPKIKGSDNGSSG
WGSEPKRGGGGGW
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagccgtcgtctctgacgaagaagatgaggtcgagctcgacgaggacgagagg
gaaccccttcacggcgacgcagtcgatgaccgggatggcgacgatgaagaagatgaagac
gaagggccagatgaatatgagaaggatgattttatagtagatgatgttgatgaagaagag
gagcaagaggaggaagaagatagggcagacagtgatgaagagaggcagaggaagaagaaa
agaaagaaaaaagaggagtatgtccttgatgaagatgactatgagctcctagaggacaat
aatgtgattgccccccgaaggaaggctgggaaatttaagcggctgaaaaaagctcagagg
catggtgagggagagcctggtggattatctgatgaggaggagtttgttggtagtggtaaa
agtggaagaactgcggaggagaagcttaagcgtaccttatttggtgatgatgaaggtcct
ccacttgaggacatagctgaagaagaggaaccagcagaagcagaagatgatggggaagtt
ggtgaagaggatgaaatggcagactttatagttgatgaagagtttgatgagactggagct
cctgtgagacagaggaagcttaaaaagaaaaaatctaggcaggcaccaggagtatcatcc
tctgctttgcaggaagcccatgaaatatttggtgatgtggatgaattactgcagctccgt
aagcaaggtttggattccagtgaatggagggaaaggaggcttgaagatgaatttgaacca
attgttctttctgaaaagtatatgacagagaaggatgaccagatccgggagcttgatgtt
ccggaaagaatgcagatatatgaggaaagcactggttctcctccactggatagaattagt
atagatgatgagagtacctggatttataatcaacttgcaagtggtacagtacattcattt
agcaagacaggcttgggaaattctataagcagggatgacatcatcagatttttggacttg
catcatgtgcagaagttggacattccctttattgccatgtatcggaaagaagagtgccta
agcttattgaaagatcctgaacaccttgagttggaagatgaaagtcaggataaaaatgac
aggccatctgtactcaagtggcacaaggtgctttggaccattaaggagctggacagaaaa
tggctgttgcttcagaagcggaaaaatgctttacaatcttactacaataaacgatttgag
gaagaatctcgacgtatatatgatgaaaccagacttaatttaaatcagcagctttttgaa
tcaattatgaagtcgctgaaggctgcagaatcagagagagaggttgatgatgttgacacc
aagtttaacttgcatttccctccgggtgaggcaggagtggatgagggacagtataagagg
cccaaaaggaaatcactttatagcatctgcagtaaggctggcctgtgggaggtggcaagc
aagtttggttacagctctgagcagtttggactgcaattatctctagaaaaaatgagaatg
gatgagttggaggatgctaaggagaccccagaggagatggcttcagactttacatgtgca
atgtttgagaatcctcaagctgtgctcaaaggagctaggcatatggcagctgttgaaata
agttgtgagccatgtgtcaggaagtatgttcgaagcaactacttggatattgttgagtta
tcaacaagcccaacacctgatggaaatgtcgcaatagatgcttttcatcagttcgcaggg
gtgaagtggttgcaaagaaagccattaaatagatttgaggatgcgcaatggctgcttatc
cagaaggctgaagaggagaagcttctccaagttactattaagttgccagaagacagatta
aataagttgataagcgacttcaatgagtactatcttagtgatggtgttagtaaatctgca
caactgtggaatgagcagcggaagttgatattgcaggatgccctttttaattttcttttg
ccttcaatggagaaagaagcaagatccttgttgactagtagagctaaaaactggttactc
atggaatatggaaaggttctttggaataaagtctctgtgggaccatatcagcggaaggaa
aatgatagctcagacgatgaagctgcaccgagggtcatggcttgctgttggggccctggg
aagccagcaactacttttgtgatgttagattcatctggggaggtgctagatgtactttac
acggggtcccttactctacgctcccacaatgttaatgatcagcaacgaaagaaaaatgat
caagaacgtgttttgaagttcatgactgatcatcaaccacaagttgctgtcctaggagct
gttaacttgtcttgtgttcgcctaaaagatgatatttatgagataatttttaaaatggtg
gaggagaatcctagggacgttggccatgatatggatggcctaagcattgtatatggggat
gaatctttgtctcgcctgtatgaaaattctcggaattcatctgatcagctacctgcacaa
tcaggcattgtcaagagggctgtggctcttgggcgttatcttcaaaatccgttggcaatg
gttgccacactttgtggaccaggaagagaaatcttatcttggaaactcaatccttttgag
aactttctcaccccagatgagaagtatgcgatggttgaacaggtcatggtagatgtcaca
aaccaggtaggccttgacgtaaatctggctataagccatgaatggttatttgcaccgctg
caatttatttcagggcttggacctagaaaggcagcatctttgcagagatcattggtaaga
tctggcgcaatatttactcgaaaggattttgtgacagcacacgggcttggtaaaaaggtg
tttgtcaatgcagttggtttcttgcgtgttcggcggagtgggttggctgctagcagcagc
caatttattgatttgttggatgatacaaggattcatccagaatcctatgctcttgcacaa
gaattggccaaagatgtttatgatgtggatggtggcaatgatgaggaggatgctttggag
atggctatagagcatgtcagggatcgacctaattatctaaaaaaccttgacgttgaagag
tatgctaaaaccaaaaagcgtgaaaataagatagaaacattttgtgatataaggagagaa
ttaatacagggttttcaggattggcgtaaacaatatgaagaaccaagtcaggatgaagag
ttctatatgatttcaggtgaaactgaggatacccttgctgaaggaagagttgtgcaggcc
acagttcgcagggtgcaagcccaaagggcaatttgtgctcttgaatctgggttgactggt
atgcttatgaaagaagactattcagatgattccagggatatttctgagttatctgacaga
ctgaatgagggcgacatcctcacttgcaagatcaaatcgattcaaaagaataggtatcaa
gtgttcctagtttgcagagagagtgagatgagaaataaccgacatcagaacacacagaat
gttgatgcctattaccatgaagaccgaagaagtctacagagtgagcaagagaaagctcat
aaggagaaggagctcgcaaagaagcatttcaagccaaggatgattgttcatcctcgtttc
cagaatataactgcagatgaagcaatgaagttcttgtctgataaggatcctggggaaagt
attattcgtcctagttctcgtgggccttcatatttaaccttaactctcaaggtttacgat
ggagtttatgctcacaaagacatagttgaaggtggaaaggaccataaggacatcacgagc
ttactccgcattggtaagaccctgaaaattggggaggacacttttgaggatttggatgag
gtaatggatcgttatgttgatcctttagtagctcacttgaagtcaatgctaaattatcgc
aagttcaagaggggcacaaaagcagaggttgatgaacttttgaagattgaaaagttggag
tatcctatgaggatagtttattgttttgggatatcgcatgaacatccaggcactttcatt
ctgacctatatacggagtacaaatccacaccatgagtatgttggtttatatcctaaggga
ttcaagttcagaaaaaggatgtttgaggacattgatcggcttgtaggatattttcagcgc
catattgatgaccctcagcatgagtcaggaccatcaattagatcagttgctgctatggtg
ccaatgcggagccctgcaactggtggttcaactaatgagggtggttggagaggccagtct
tttgacagggatcggtcatctacgccgagttcacgaacaggccgaaatgattacagaaat
ggtggcagtagagatggacatccaagtggcctacctagaccatatggtggccgtggccgt
ggtcgaggaacatataacaacagaggaaatagcaccggcaatgagaggcaggattctggt
tatgatgctccaacatggggtgcagattccaaagatagggatgatggcttgggcaacttt
cctggtgcaaaggtccaaaactcacctggaagggaagctttccctggtggttggggtgct
ggtggaagtggcagtggaggcagcagttggggtggtggcagtggcagtggctggggtcaa
ggaagtggtggagcaggagggtggggtggagctggtgcaaatgatgctgctgctgataat
gggactacaggatggggttcagacccgaaaataaaaggttcggataatgggtcttcggga
tggggttctgaacccaaaagaggtggtggcggtggttggtga
DBGET
integrated database retrieval system
