KEGG   Prunus avium (sweet cherry): 110759394
Entry
110759394         CDS       T05161                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03030  DNA replication
pavi03410  Base excision repair
pavi03420  Nucleotide excision repair
pavi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110759394
   03410 Base excision repair
    110759394
   03420 Nucleotide excision repair
    110759394
   03430 Mismatch repair
    110759394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pavi03032]
    110759394
   03036 Chromosome and associated proteins [BR:pavi03036]
    110759394
   03400 DNA repair and recombination proteins [BR:pavi03400]
    110759394
DNA replication proteins [BR:pavi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110759394
  DNA Replication Termination Factors
   ELG1-RFC complex
    110759394
Chromosome and associated proteins [BR:pavi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110759394
DNA repair and recombination proteins [BR:pavi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110759394
  Check point factors
   HRAD17(Rad24)-RFC complex
    110759394
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 Mg_chelatase DUF815 AAA_22 RuvB_N ABC_tran RsgA_GTPase AAA_29 nSTAND6 AAA_23 AAA_2 AAA_5 AAA_24 T2SSE AAA_16 SprT-like NB-ARC
Other DBs
NCBI-GeneID: 110759394
NCBI-ProteinID: XP_021817136
UniProt: A0A6P5SU25
LinkDB
Position
Unknown
AA seq 354 aa
MLWVDKYRPKTLDQAMVHQDIAQNLKKLVSEQDCPHLLFYGPSGSGKKTLIIALLRQIFG
PSADKVKVENRAWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR
CLNVRINAPTEEQIMKVLEFIGKKEGLQLPSGFAARIAEKSNRSLRRSILSLETCRVQQY
PFTSNQAIPPMDWEEYVSEIASDVMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLYE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKGFLIAAFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtacagacccaaaaccctagaccaggcaatggtccaccaagat
atcgcacaaaacctcaagaaacttgtctcagagcaggactgcccccatttgctcttttat
ggcccttctggttccggcaagaaaaccctaatcatcgcccttcttcgtcagattttcgga
cccagcgccgataaggtgaaggtggaaaacagggcatggaaagttgatgctggaagtaga
accattgatatagagctgactacattatcgagcaccaaccatattgaactgaaccccagt
gatgcagggtttcaggacagatatattgttcaagagataattaaagaaatggctaaaaat
agacccattgacacaaaagggaaaaaaggatataaagtcttagtgctgaatgaagttgac
aaactttcaagagaagctcaacattctcttcgaagaactatggagaaatatagtgcctat
tgcaggctaatactatgctgtaacagctcttcaaaggttactgaagcaatccggtctcgg
tgtcttaatgtgcgaataaatgcaccgacagaagaacagattatgaaagtattggagttc
attggaaagaaagaagggctgcagcttccttctggatttgctgctcgtatagctgaaaaa
tcaaataggagcttaaggagatctatattgtcattagaaacttgtcgtgttcaacagtat
ccctttacaagtaaccaggcaatacccccaatggattgggaggaatatgtttctgaaatt
gcatctgatgtaatgaaggagcagagcccaaaaaggctttatcaggtgcggcaaaaattg
tatgagctacttcttaattgtattcctccagagatcatcttgaagaggcttctttatgag
ttattgaagaagttggatgcagagttgaagcacgaggtctgccattgggctgcatattat
gaacataggatgcgtcttgggcagaaagctatatttcaccttgaagcattcgtggccaag
ttcatgagcatttacaagggtttcctcattgcagcatttggttga

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