Prunus avium (sweet cherry): 110761066
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Entry
110761066 CDS
T05161
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03013
Nucleocytoplasmic transport
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110761066
03015 mRNA surveillance pathway
110761066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110761066
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110761066
mRNA cycle factors
P-body specific factors
110761066
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
110761066
NCBI-ProteinID:
XP_021819136
UniProt:
A0A6P5SZK4
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MDHHEEESRAGGEPHGKQDDEEAAARLEEIKKSIEAKMALRQSNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLLQGLLKIFFPGKSGDDLDMDKNLRAMKKRSTLKLLLELFFVGVIED
GGIFVNIIKDLTSGEHLKDRDTTQTNLTLLASFARQGRMFINLPLSGPEIHEEFFKGLNI
TTEHKKFFRKAFQTYYDAAAELLQSEHTSLRQMEHENSKILNAKGELSDENVSSYEKLRK
SYEQLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEDASSPAAGKDSSVLEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEADKSNDQSAKAQEQPTEPTLESDQSQQTTEDTGEASADVG
ALQEGKSIEKGKDKEEKDKEKIKDLDKEKGDRKGENEKEKLKSIEGTNLDALLQRLPGCV
SRDLIDQLTVEFCYLNSKANRKKLVRAVFNVPRTSLELLPYYSRMVATLSTCMKDVSSML
LAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKVAPAGLVFSCLKACLDDFTHHNI
DVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVTKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWGECEPYLLKCFMKVHKGKYG
QIHLIASLTAGLSRYHDQFAVSVVDEVLEEIRLGLELNEYGMQQRRIAHMRFLGELYNYE
HVDSSVIFETLYLILVFGHGTQEQQDVLDPPEDCFRIRMVITLLETCGHYFDRGSSKRKL
DRFLMHFQRYILSKGVLPLDVEFDIQDLFAELRPNMTRYSSIDEVNAALVELEEHDRTVS
TDKANNEKHSDTEKPSRRTTSNKKSVNGTEENGVRHGDHGDSDSDSGSGTIDPDGHDEEE
LDEENHGDGSDSEEEDDDGGGPASDEDDEVHVRQKVAELDPQEEANFELDLKAVMQESME
QRRLELRGRPTLNMMIPMNVFEGSIKDHHGRGVGGESGDEALDEESGGSKEVQVKVLVKR
GNKQQTKQMYIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGLGNQTLNY
MQSGGNRVAGRGSNWEGTSGRGGGTRHRYHSYSGGGVYYSRKK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggaggaatcccgtgctgggggtgaacctcatgggaagcaagatgat
gaggaagctgctgctcggcttgaggaaatcaagaaatcaattgaggcaaagatggctctt
cgtcaaagcaatttgaaccctgagaggcctgacacagggtttcttaggacactggattct
agcattaagcgcaacacagcggttattaaaaaactgaagcagataaatgaagagcagcgg
gaagggctgatggatgacttgagaggtgtcaacctaagcaaatttgtcagtgaagctgtt
actgctatttgtgatgccaagcttagatcatcggacattcaagcagcagttcagatctgc
tctctgcttcatcaaagatacaaagacttctccccaagcctacttcaaggtcttttgaaa
atcttctttcccggaaagtctggggatgacttagacatggacaagaacctgagggccatg
aagaagcgaagcactttgaaactccttttggaacttttctttgttggagtcatagaagat
ggtggtatttttgtgaatatcattaaggatcttaccagtggagaacacttaaaggatcgg
gatactactcagacaaatttgactcttcttgctagttttgctcggcagggaagaatgttt
attaaccttccactctctgggccagaaattcacgaagagtttttcaagggccttaatatc
acaacagagcataagaaattcttcaggaaggcatttcaaacatattatgatgctgcagca
gaactacttcaatccgagcatacttcacttcgccaaatggagcacgaaaattctaaaatc
cttaatgctaaaggagagctcagtgatgaaaatgtctcttcatatgagaaactgcggaaa
tcttatgaacaattgtaccgcaatgtctcatctttagcagaagcacttgatatgcagcct
ccagtaatgccagaggatggtcatacaactagggttactagtggagaggatgcttcatct
ccagctgctggaaaggactcttctgtacttgaagccatatgggatgatgaagatacgagg
gctttctatgagtgcttaccagatcttagagcgtttgttccggcggtattattgggagaa
gcggataaaagcaatgatcaatctgcaaaggctcaagaacaaccaactgagcccacactt
gaatcagaccaaagtcaacagactacagaagatactggggaggcatctgcagatgttggt
gctttacaggagggcaaaagcatagagaaagggaaggacaaggaagaaaaggataaggag
aagattaaagatctggacaaagagaaaggcgatagaaaaggggagaacgagaaagagaaa
cttaaaagcatcgaagggacaaatttggatgctttactgcagaggcttcctggttgcgtg
agccgtgatcttattgatcagttgactgtagagttttgttatttaaattcaaaagcaaat
cggaaaaagcttgtgagggcagtgtttaatgttcccaggacatcattggagctactacct
tactattcacgcatggttgccacactgtcaacttgtatgaaggatgtatcttccatgctc
cttgcaatgctggaagaagagttcaacttcttaattaataaaaaggatcaaatgaacatt
gaaacaaagattaggaacattagatttattggagaactctgcaagtttaaagtcgcacca
gctggtcttgtctttagttgtttgaaggcttgtttagatgatttcactcatcataacatt
gatgttgcttgcaatcttcttgagacttgcgggcgttttctgtatcggtctcctgaaact
accgtgcggatggctaacatgttggaaatattaatgcgtttgaagaatgtaaaaaattta
gatcctcggcacagcacccttgttgaaaatgcttactacctgtgcaaaccgcctgaaaga
tccgcacgagtcactaaagtccgtcctccattgcatcagtatataaggaagttgctattc
tcagatctcgataagtctacaatagagcatgtgctcaggcaactgcgtaaactaccatgg
ggtgaatgtgagccatatcttttaaaatgctttatgaaggttcacaaagggaagtatggc
cagatccacttgattgcttcgctgactgctggtctgagtcgctaccatgatcaatttgct
gtatctgttgttgacgaggttttagaggagatcaggcttggcctagaattaaatgagtat
gggatgcagcaaagacggattgcccatatgcgattcttaggagagctatacaactatgag
catgtagattcttctgttatttttgagactctttacttgattcttgtctttggccatggc
acacaagagcagcaagatgtactggatccaccagaagattgtttccgcattaggatggtt
attactcttctggagacctgtggccactactttgaccgaggctcttccaagaggaagctt
gatcgattcttgatgcacttccagagatatatactaagcaaaggagtactcccactggat
gttgaatttgacatacaggacttatttgcagaactacgccccaacatgacccgatactca
tccattgatgaagtaaatgcagctctagtagaacttgaggagcatgatcgtactgtctcc
actgacaaggccaataatgagaagcattctgacactgaaaagccttcaaggaggaccaca
tccaacaaaaagtctgtgaatggtactgaggaaaatggtgtaaggcatggagaccatgga
gatagtgacagtgattcaggaagtggcaccattgatccagatggacatgacgaagaagaa
ttagatgaagagaatcatggtgatggatctgacagtgaagaggaggatgatgatgggggt
ggacctgcatctgatgaggatgatgaagtccatgtcagacagaaggttgcagagctggat
cctcaggaagaagcaaattttgagctagatctcaaagctgttatgcaggaaagcatggag
caacgcaggctagagttgcgaggccgacctacattaaatatgatgataccaatgaatgtg
tttgagggttccatcaaggatcatcatggaagaggggttggaggggaaagtggagatgag
gctttggatgaagagtctggaggaagcaaggaggtgcaggtgaaagttcttgtgaagcgt
ggtaacaaacaacaaacaaaacagatgtacatcccacgggattgctcgcttatacagagt
acgaaacagaaagaagcagcagagcttgaagagaaacaagacatcaagaggctggttttg
gagtataatgatagagaagaggaggagcttaatggattggggaaccaaactttgaactat
atgcagagtgggggcaacagagttgctggccgtggcagcaattgggaaggaactagtggt
agaggtggtggaacacgtcatagatatcatagttattcaggtgggggggtttattacagc
cggaaaaagtaa
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integrated database retrieval system
