Prunus avium (sweet cherry): 110761144
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Entry
110761144 CDS
T05161
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110761144
Transcription machinery [BR:
pavi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
110761144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
DUF4376
Motif
Other DBs
NCBI-GeneID:
110761144
NCBI-ProteinID:
XP_021819237
UniProt:
A0A6P5SYN0
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MGLGFRLNLKCGFPVHSSHWQTTSPSKLSSTSVRGREGSFNSARLSFLSVISEEGEASSK
DPLKVYTCPSASPQILEDGVSEMEEVKTAFRRVPKSISDNQMPVAEGKFMSSKGLEACTA
SHFSLLLQNLNVLEETFATSDVLKLEKEILLQLGRLGALKLFDICLSRTLKTSSLLDFPD
IPTVPIEEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAVVSSNSLPPKTVWKGLKK
PTPSSGKRASKYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVVTLRCWAEAA
GVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAER
FDHSRGYRFSTYVQYWIRKSMSRLVARHARGVQIPFTLSKAINQIQKARKANYNSHMKYP
DDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQ
HMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKL
RVEESHKYLSHYLNN
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggttttaggctgaacctcaagtgtggctttcctgttcattcttctcactgg
caaaccacttccccttccaagctttcttcaacttctgttagaggcagggagggctctttc
aactcagcaaggttgtcctttctgtctgttatttctgaggaaggtgaggcttctagtaaa
gatcctctgaaagtgtacacttgtccatctgcttccccgcaaatcttagaggatggtgtc
tcagaaatggaagaggtgaagacagcctttaggagggtgccaaagagcattagtgacaac
cagatgcctgttgcagaaggcaagtttatgtccagtaaaggcttagaagcatgcacggca
tctcattttagtttgttactgcaaaatcttaatgttttggaggagacttttgctacttca
gatgtgttaaagttggagaaagagattcttttgcaactaggaaggcttggagctctgaag
ttattcgatatctgtctatcgagaactcttaaaacctcgagccttttggattttcctgac
atacccacagtaccgattgaagagggtaagatggagagaaaagaagataacaacgtaggt
gagattattgttcgttctgggaaaaaggaagaaagaagatcaagaaaaagaacatcagat
aatgccgtagtgtcttctaattcattgcctccaaaaacagtttggaaaggtcttaaaaag
cctactccttcgtcaggaaaaagagcatcaaaatatagaagtagaagactgaccatttct
aaaaatgaggcagaaatgtcaatcggggttaaggtgatcgccgacttggagagaattaaa
gaaactttggaaaaggaaactggtaaagtagtgaccttaaggtgctgggcagaagcagct
ggagttcatgaaaaggtgctgctacagcatttgcgttttggttggtattgccaggatgag
cttataaggagcactcgttccttagttctataccttgctagaaactatagagggctaggg
gtagccttggatgatttaatgcaggctggaaacctgggtctcctgcaaggtgcagaaagg
tttgatcactcaaggggttatagattctcaacctatgttcaatactggataaggaaatca
atgtcaagattggtggcacggcatgctaggggggtccaaattccgttcacactaagcaag
gcaataaatcagatacagaaagctcgaaaagccaattacaacagccacatgaaataccca
gatgatgaggaaattgcaaagattacaggtctttctttggcgagaatcagatcagctagt
acatgtctgagagttgtgggttcggtagatcataaaatgtgggaaagctctgatgggaca
tatatggaatttacaccagacacatcactaaagagccctgaagaaactgtcatgaggcaa
cacatgaaaaaggacattcacgatctgctgaaagggttgaatttgagagagaggcaagtg
ttggtactgcgatacgggctaaacaactacgaccccaagtcacttgaggagattggcaga
cttttccatgtgagcaaggagtggataaggaagatagaaaagaaagctctgatgaagctg
agggttgaagaatcccacaaatacttaagccattacttgaataactag
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