Prunus avium (sweet cherry): 110762143
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Entry
110762143 CDS
T05161
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110762143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110762143
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110762143
Complex C
U5 SnRNP specific factors
110762143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_CcmH_CycH
HAT_Syf1_M
TPR_2
TPR_8
ubiquitin
TPR_1
PMC2NT
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
110762143
NCBI-ProteinID:
XP_021820437
UniProt:
A0A6P5SUB3
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MVFIASPNHKTLTLNLNPNTTTLQSLKFQIEQISNVPVSHQRLFISQSLQLLTQRGSTLL
ADLGIKPYSTLTLHVPFFGGTLPHKNPKPRLDFHNSKPPEGYVAGLGRGASGFTTRSDIG
PARSALELPDRAIGQPEEAEEEKGYDESQQFDDFEGNDVGLLAPDAKLDEDDEKADAMWK
AVDERMDSRRKDRKEALLREEIEKYRASNPKITEQFASLKRNLHTLSAQEWESIPEIGDY
SMRNKKRRFESFVPVLDTLLEKATQEKELVTAIDPTSTDLTAVRQGRDIVLSLKLDRISD
SVSGLTVVDPKGYLTDLKSMSITSDTDIHDKNKARLLMMSLMKSNPKNPRVWISAARFEE
VAGKMKSARKLIQEGCEECPKSEDVWLEACRLASPKDAKAVIAKGVKFIPNSVNLWMEAA
KLEHDNLNKSRVLRKGLEHIPGSVRLWKAVVDLANEEDARSLLKRAVECCPLHIEFWLAL
TRLETYENAKKVLNKARENLSEEAAIWITAAKLEEANGNVSMVGKIIERGIRALQKTAVI
IDREAWMKEAEAAERAGSIMTCQAIIRSAIGIGVEEEDRKRTWVSDAEDFMKKGSIETAR
AIYAHALTVFLTKKSIWRKAAQLEKSHGTRESLVALLRKAVTYCPQAENLWLFGAKEKWL
AGDVPAARAILQEAYAAIPNSQEIWLAAFKLEFENHESERAKMLLAKARERGGNERVWMK
SAIVERELGNIDEERKFLVEGLKRFPSFFKLWLMLGQLEERLDHLEKAKKAYHSGLKHCP
NYLQLWLSLANLEEKMIGLSKARAVLTIARKKNPQNSELWLASVRAELRHGKKKESDILM
AKALQECPNSGILWAAALEMVARTQRKAKSKDALEKCRHDPHVVAAVAKLLWHDRKLDKA
RNWLNMAVTLAPDIGDFWALYYKFELQHGTEENQKDVLNRCVAAEPKHGEIWQPISKAVD
NSHQPIEAILKKVVAAAENNKQ
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcatcgcatcccccaaccacaaaaccctaaccctaaacctaaacccaaacacc
accaccctccaatctctgaaattccaaattgaacaaatttccaacgtacccgtctctcac
cagcgcctattcatctcccaaagcctccaattgttgacccaaagaggctccaccctcctc
gccgaccttggcatcaaaccctactctaccctaaccctccacgtccccttcttcggtggc
accctaccccacaaaaatcccaaaccccgcctcgatttccacaattccaagcctcctgag
ggttatgtcgctgggcttggccgtggtgcttctgggttcaccacaaggtccgacattggg
cctgcccgatctgccctggagctgcccgatagggcaattgggcagcctgaggaagcagag
gaggaaaaagggtacgatgagagtcagcaatttgatgatttcgaaggcaacgatgttggg
ctgttggcaccagatgccaaactggatgaagatgatgaaaaggctgatgcaatgtggaaa
gcagttgatgagagaatggactccaggagaaaggacaggaaagaggctctgttgagagaa
gagattgaaaagtacagagcttccaatcccaagattacagagcagtttgcaagtttgaag
aggaatttgcacacattgtctgcccaagaatgggagagtatacctgaaattggggattat
tcaatgagaaacaagaagaggaggtttgagagctttgtgccggtgctggatacccttttg
gagaaggcaacgcaggagaaagagcttgttactgcaatagatcccactagtacagatttg
actgccgtgaggcagggcagagatatagtgttgtctttgaaattggataggatttcggat
tctgtctcggggttgacagttgttgacccaaaagggtatcttactgatcttaaaagtatg
agcatcacaagtgatacagacattcatgataaaaacaaggctagattgttgatgatgagt
ttaatgaagtcaaatcctaagaacccacgtgtgtggatttcggcagcaaggtttgaggaa
gtggcaggaaagatgaagtcagccaggaaattgattcaggaagggtgtgaggagtgtcct
aagagtgaggatgtgtggttggaggcttgtaggcttgctagccccaaagatgctaaggct
gttattgctaagggagttaaatttattcccaattcagtcaacttgtggatggaggctgcg
aaattggagcatgataatttgaacaagagcagggtcttgaggaaagggttggaacacatt
cctggttctgttaggctgtggaaggcggtcgtggatctagcgaatgaggaggatgctaga
agtctgctcaaaagggctgtggagtgttgtccattgcacattgaattctggcttgcactc
acaagattggaaacttatgagaatgccaagaaggtcctcaataaggcaagggagaatcta
tcggaggaggctgcaatttggatcaccgcagcaaagttggaagaagctaatgggaatgtg
tccatggttgggaagattattgaaagaggtattagggctttgcaaaaaacagcggttatt
attgatagagaagcatggatgaaggaggctgaagctgctgagcgtgcagggtctataatg
acttgccaagctatcattcggagcgcaattgggattggtgtggaggaggaagataggaag
aggacatgggtttctgatgcagaggacttcatgaaaaaaggttccattgaaacagcccga
gcaatttatgcgcacgcacttactgtcttcttaaccaagaagagcatatggaggaaagcg
gctcagcttgaaaagagccatggtactagggaatctcttgttgctttgcttcgtaaagcg
gtgacgtattgcccacaggctgaaaacttgtggctttttggtgctaaggagaagtggctt
gcaggggacgtgcctgctgcccgtgcaatcctccaagaagcttatgctgccattcccaac
tctcaagaaatttggcttgctgcatttaaacttgagtttgagaatcacgaatccgagaga
gcaaagatgcttcttgccaaagcccgagaaaggggaggtaacgaaagagtatggatgaaa
tctgcaattgttgagagggaattagggaacattgatgaggagaggaagtttcttgttgaa
ggcttgaagcgcttcccttcattctttaaattgtggttaatgcttggacagctagaggaa
cggcttgatcatttggaaaaagccaaaaaggcctatcactcaggtctgaagcactgcccc
aattatctacaactctggctttctcttgctaatctagaggagaaaatgattgggctgagt
aaagctcgcgcagttcttacaattgccaggaagaagaaccctcagaactctgaactgtgg
cttgcttctgttcgagctgaactgaggcatggcaagaagaaggaatctgatattttgatg
gcaaaggctttgcaggagtgtcccaatagtggtatcttgtgggcagcagctctcgagatg
gtagctcgtacccaacggaaggcaaagagtaaagatgcccttgagaaatgtcgtcatgat
ccccatgttgttgctgctgtggccaagttattatggcatgacaggaagttggacaaagct
aggaattggctcaacatggcagtaacgcttgcccccgatattggggatttttgggcttta
tactacaaatttgaacttcagcatggtactgaggagaaccaaaaggatgtattgaacaga
tgcgttgctgcagagccaaagcatggagaaatatggcaacctatttcaaaggccgtggat
aactcccatcaaccaattgaagctatcttaaagaaagttgtggcagcagccgaaaataat
aaacagtag
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