Prunus avium (sweet cherry): 110762508
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Entry
110762508 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110762508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110762508
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110762508
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110762508
mRNA degradation factors
3'-5' decay
Ski complex
110762508
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110762508
NCBI-ProteinID:
XP_021820852
UniProt:
A0A6P5T1V3
LinkDB
All DBs
Position
Unknown
AA seq
1347 aa
AA seq
DB search
MDPIVAANGLSFRVGFSGHSGHLRLEPLSTDESSNPVNSLPDFILPPAFARETPESIKEY
IEDTYLLPRLDPEVFSPEKVGRQWDFDWFDKANVPLEPSLPRTVVVPTWELPFRRQNNGS
VGGQWEPKSVQVDVSELTVGAQESGSLPRVAGPAKDYVRGSINNRPFRPGGLDDSQSLER
VLPDGASNGEWVHELLIGGSAQAVPPSFKQGLGLGDLKAYPCSWNVYKDQSSLKSTSDEK
VDLQSELSVQFDDLFKKAWEEDVVEFEGDGQLSGSESVKSEDEANEVDVARNSCEPELSV
LDEILSVEAKSIFNETDDDGEKNPEAWAISGGTERIAENFHDLIPDKALDFPFELDKFQK
EAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGK
FDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVW
EEVIIMLPRHINIVLLSATVPNKVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGEL
YKICESESFIPQGFKAAKDAFKKKNMSAATGGSGSHAPASASHDGARTQKQSSNWGKQKK
QSGPQNSGNFSKAGGANQNNGNGMNNWGLRRSDASLWLSLINKLSKKSLLPVVIFCFSKN
RCDKSADSMYGIDLTSTSEKSEIRVFCDKAFSRLKGSDRTLPQVVRVQNLLHRGIGVHHA
GLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEY
TQMAGRAGRRGLDKIGTVIVMCRDEILEERDLKHVIVGSATRLESQFRLTYIMILHLLRV
EELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKTIECIKGEPAIEEYYDMYSEAE
THRKEILEAVMQSTVAQKFLTAGRVVVMKSQSAQDHLLGVVVRAPSSSNKQYIVLVLKPE
LQTPLASGNLQDSKNTDFPQGYFMAPKSKRAIEEDYFSGVTSRKGSGVINIKLPHQGSAA
GVRFEVREVDNKDFLCICNCKIKIDQVRLLEDGSSPAYSKTVQQLLDTKSNGNKYPPALD
PIEDLKLRDVNLVEKYYKWTNLLQKMAENKCHGCSKLEEHIMLAREIKRHKEEVNALKYE
MSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD
LEPEEAVALMSAFVFQQKNTSEPSLTPNLSQAKQRLYNTAKRLGELQGHFKVQINPEEYA
RENLKFGLIEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAASIMGNSA
LYKKMETASNAIKRDIVFAASLYVTGV
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggatccgattgttgcggcaaatgggctctcgttccgagtcgggttctccggccacagt
ggccacctcaggctcgagcctctttccaccgacgagagctccaaccccgtcaattcactc
cctgatttcattctgccgcctgcatttgctagggaaacgcctgaatcaataaaagagtat
atagaggacacgtatctcttgccaagattggaccctgaagtattttcgccagaaaaggtt
gggaggcagtgggattttgactggtttgataaggcaaatgtacccttggagccatcattg
ccgcgtacagttgtggttcccacatgggaattaccatttaggcgccaaaataatgggtcg
gtaggaggtcaatgggaacctaaatccgtgcaggtggatgtatcagaacttacagtagga
gctcaagagtctggttccttgccacgcgtggctggaccagcaaaggattatgtacgggga
agtatcaacaaccgcccttttcgcccaggaggcttggatgattcccaatctctagaaaga
gttcttcctgatggtgcttctaatggcgagtgggttcacgaacttctgattggtggctct
gctcaggctgtacctccaagctttaagcaaggattgggccttggtgatctcaaggcctat
ccatgctcgtggaatgtatataaggatcaaagttcactgaagagtacgtcagatgaaaag
gtggatttgcagagtgagttgtccgtgcagtttgatgacttgttcaagaaggcctgggaa
gaggatgttgttgaatttgaaggagatggtcaattgtcaggatcagaatctgttaagtca
gaggatgaagcaaatgaggttgatgttgccagaaattcatgcgagcctgagttatctgtg
ttagatgagattttgtcagttgaggcaaagtcaatattcaatgaaactgatgatgatggt
gaaaaaaacccagaggcttgggctatcagtggaggtacagaacggattgcagagaatttt
catgatcttattcctgacaaggcacttgattttccttttgaattggataaattccagaag
gaggctatttattatcttgaaaagggggactctgtctttgttgctgctcacacatcagct
ggaaagactgttgttgcagaatacgcatttgctttagcatcaaaacattgcaccagagct
gtgtatactgctcctattaaaaccatcagcaatcaaaagtatagagatttctgtggaaaa
tttgatgttggacttctcactggtgatgttagcttgaggccagaggcatcttgtcttatt
atgaccacggaaatcttgaggtcaatgctttatcgcggtgctgacataatacgtgatatt
gaatgggttatctttgatgaggtgcactatgtcaatgatgtcgaaagaggtgttgtttgg
gaagaagttattataatgcttccaagacacatcaatattgtcctcctttcagctacggta
ccaaacaaagtggagttcgctgactggattggacggacaaagcaaaagaaaatccgtgtt
actgggactacaaaaagaccagtcccattggagcactgcctattttactccggagaactt
tacaaaatatgtgaaagtgaaagctttattccccaggggttcaaagctgcaaaagatgca
ttcaagaaaaagaatatgagtgctgccactggtggtagtggatcacatgctccagcttca
gcttctcatgatggggctcgaactcaaaaacaaagttctaactggggaaaacaaaagaag
caatctggtccccaaaattcggggaatttctccaaagctggtggagcaaatcaaaacaat
ggaaatggcatgaacaattggggtttaaggagatcagatgcctctttgtggctgtcactt
attaacaagctctcgaagaagtctctgttacctgtggttatattttgtttctcaaagaat
cgctgtgataagtcagctgatagcatgtatgggattgacctcacaagtacttctgagaaa
agtgagattcgtgtgttctgtgataaagcattttcgcggctaaagggatctgacaggact
ttaccacaggttgtcagagttcaaaaccttcttcatagagggattggtgtccatcatgct
ggactgcttccaattgttaaggaagttgttgaaatgcttttttgtcgtggtgtaatcaag
gttttgttctcaacagagacatttgcaatgggagtcaatgcaccagctagaacggttgtt
tttgatacgttaaggaaatttgatggcaaggaatttagacaattactgccaggagaatac
actcaaatggcaggccgtgcaggccgaagaggacttgataaaattggtacagttattgta
atgtgccgtgatgaaatcctagaagaaagagatttaaagcatgtcatagttggaagtgca
accaggcttgaatctcagttccggctaacctatattatgatcttgcatctccttcgtgtt
gaggaactgaaggtggaggacatgctgaaaagaagttttgcggaattccatgctcagaag
aaactaccagaacagcagcaacttcttatgcgaaagcttgcacaacctacaaaaactatt
gaatgcataaaaggtgaaccagctattgaggagtattatgacatgtactcagaagctgag
acacataggaaggaaatattggaggcagttatgcagtccactgttgcccaaaaatttctt
acagctgggagagtggtagtcatgaaatcacaatcagcccaggaccacttgcttggagtc
gttgtgagagcaccttcttctagtaataagcaatacattgttttagtgctgaaacctgaa
ttacaaactcccctggctagtggtaacttgcaagatagtaaaaacaccgattttccacaa
ggttatttcatggcaccaaaatctaaacgtgctattgaagaagattatttttctggcgtc
acttctcgcaaaggatcgggtgtcatcaacataaaattaccacaccagggttctgctgct
ggggtaaggtttgaggttagagaagtcgataacaaggattttttatgcatatgcaattgc
aagataaagattgaccaagttcggcttcttgaagacggtagcagtcctgcttactccaag
acagttcaacagctgttggacacaaaatccaatggaaataagtaccctccagccttagat
ccaatagaagatctgaagttgagagatgtgaatcttgtggaaaaatactacaagtggact
aacttattgcaaaagatggcagagaataagtgccatggttgttcaaagttggaggagcac
attatgctagcaagagagataaagagacacaaagaggaagttaatgctctaaagtatgaa
atgtcagatgaagcactgcaacaaatgccagattttcaaggccggatagatgttctgaag
gaaattggatgtatagatgccgaccttgttgttcaaataaaaggccgtgttgcgtgcgaa
atgaattcaggggaggagttgatatgcacagagtgtttgtttgagaaccaactggatgac
ctggaaccagaagaagctgtggcgttaatgtctgcctttgtgtttcagcagaagaatact
tccgaaccttctcttactccaaacctgtctcaggcgaaacaaagattgtacaacacagca
aaaagactgggcgagcttcaaggccacttcaaagttcaaataaatccggaggagtatgcc
cgagagaatctcaagtttggtcttattgaagtcgtttatgagtgggcaaagggcactcca
tttgcagatatttgtgaacttacagatgttcctgaaggcatgatagtgcggaccattgtc
agacttgatgagacatgccgtgagttcaaaaatgctgcatctattatgggtaattctgct
ctgtacaagaaaatggaaactgcttcaaatgcgataaagcgtgatattgtatttgcggct
agcttatacgtcaccggagtttaa
DBGET
integrated database retrieval system
