Prunus avium (sweet cherry): 110762668
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Entry
110762668 CDS
T05161
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110762668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110762668
03036 Chromosome and associated proteins [BR:
pavi03036
]
110762668
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110762668
Coactivators
SAGA/TFTC/STAGA complex
110762668
Chromosome and associated proteins [BR:
pavi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
110762668
STAGA complex
110762668
TFTC complex
110762668
SAGA complex
110762668
SLIK complex
110762668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_NWD2_C
WD40_like
PALB2_WD40
Beta-prop_DCAF12
Beta-prop_VPS8
LisH
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
110762668
NCBI-ProteinID:
XP_021821023
UniProt:
A0A6P5T375
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MDEESVRKFVAAYLKKKGFKQTENAFQEELNKNTNNSSSPISFNSQFEPDVAKHILSFSE
FEDGPAKYQDGYAKLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHVQEARTFFNS
FREDHEMMHLRDLQKLEGVLSPSHLQEMEFAHSLRQSKVNIKICQYSYELLLQFLHKSQS
TTMLGIINEHINFQVSPGQPSSISDDAESVTLTGSSQDSANQINQKEIHWGLLEDSFEER
LEKAGGLLLESEKAEGETKEGDWDENKKKSIEGAKQGSSIKKLKKDKAAGATGKNARPEA
TPVATAPRVKAELTLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCAS
ISHDGSLVAGGFSDSSLKVWDMAKIGQQGVDSLQGENGTTSSEQVLGSNGGKRPYTLFQG
HSGPVYSATFNPLGDFILSSSADSTVRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFA
SASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQTGEC
VRIFIGHRSMVLSLAMSPDGRYMASGDEDGAIMMWDLSSGRCVTPLTGHTSCVWTLAFSG
EGSLLASGSADCTVKLWDVTASTKLPKTEENKSGNTSRLRSLKTLPTKCTPVYSLRFSRR
NLLFAAGVLSKTV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagagcgtacggaaatttgtggccgcatacctgaagaagaaagggttcaag
caaacggagaacgctttccaggaagaacttaacaaaaacaccaacaactcttcgtctcca
atctctttcaattcccaatttgaacccgacgtcgcaaagcacatcctctccttctccgaa
tttgaggatggtcctgcaaagtatcaagatggatatgccaaattgaggtcttggacttat
agttcactagatttgtacaggcatgagttacttcgtgttctttatccggtatttattcat
tgtttcatggatctggttgcaaaaggtcatgttcaagaagctcggacatttttcaatagc
ttccgtgaagaccatgaaatgatgcacctacgagatctacagaagttggagggagttcta
tctccttctcatttgcaggagatggaatttgctcattctctcaggcagagcaaagtgaac
ataaagatttgccagtactcctatgagcttctgctgcagtttctacacaagtcacaatcc
accacaatgctcgggattatcaatgagcatatcaacttccaagtttctcctggacaaccc
agctcaatttctgatgatgctgagtctgtaacacttactggaagcagccaggattcagct
aatcagataaaccagaaggaaatacattgggggttgctcgaagattcttttgaagaacgt
ttggaaaaggcagggggcttgcttttagagtctgaaaaagcagaaggggaaaccaaagaa
ggggactgggatgagaataagaaaaaatcaattgaaggagctaaacaaggttcttcaatc
aaaaagttaaaaaaggacaaggctgctggtgcaacgggcaaaaatgcacgccctgaggca
acccctgtcgctacagcaccaagagtcaaagcagagcttactttgccagtaattccgaca
gaggttgaacagtctattcttgaagacttgagaaaccgtgtacaattgagtagtgctgct
ctcccatccgtcagcttttatacatttattaacacacacaatggtttaaactgtgcatct
atatcccatgatggatccttggttgctggtggattttcagactcatcactgaaggtatgg
gatatggcaaagattgggcaacaaggtgttgattctttgcagggtgagaatggaaccact
tcaagtgaacaagttcttgggtcaaatggtggaaaaagaccatatactttgtttcagggt
cattcagggccagtttattcagctactttcaatcctcttggagattttatactttcctct
tcagcagactcaactgttcggttgtggagcacaaaactaaatgcaaatcttgtttgctac
aagggtcataattaccctgtgtgggatgttcagtttagtcctgtaggccactattttgca
agtgcttcacatgatcgaacagcaaggatttggtctatggacaaaatacagcctttgaga
ataatggcagggcacttatctgatgttgattgtgtacaatggcatgccaactgcaactac
attgccactggttctagtgacaaaacagttcgattgtgggacgtacagactggagagtgt
gtccgaatattcatcggtcacaggagtatggttttgtctctggcaatgtcacctgatggt
cggtacatggcttctggtgatgaagatggcgcaatcatgatgtgggacctttcaagcggc
cgctgtgttacacctctgacaggtcacacctcatgcgtgtggacacttgcttttagtggt
gaaggttcgcttcttgcttcggggtctgctgattgcactgtaaaactatgggacgtaact
gcaagtacaaagttgccaaaaactgaagaaaacaaaagtggaaataccagcagactgaga
tcattgaagactttaccaaccaagtgtacccctgtctactcgttacggttttctcgaaga
aaccttctatttgctgccggggttctctcaaaaactgtataa
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