Prunus avium (sweet cherry): 110763769
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Entry
110763769 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03013
Nucleocytoplasmic transport
pavi03015
mRNA surveillance pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110763769
09122 Translation
03013 Nucleocytoplasmic transport
110763769
03015 mRNA surveillance pathway
110763769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110763769
03041 Spliceosome [BR:
pavi03041
]
110763769
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110763769
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110763769
Spliceosome [BR:
pavi03041
]
Complex C
Other components
EJC/TREX
110763769
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110763769
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110763769
NCBI-ProteinID:
XP_021822308
UniProt:
A0A6P5T554
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MGETRDDVYEEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGHNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggacgatgtgtacgaggaggagcttgtcgattatgaagaagaggag
gagaaggcccccgactccgcagctaaagtcaatggcgaagcccctaagaagggatatgta
ggaattcacagttcagggttcagagatttccttttgaagccagagcttcttcgagctatt
gtggactccgggtttgagcatccgtctgaagtgcaacatgaatgtattcctcaagctatc
ctgggaatggatgtcatttgtcaagctaaatctgggatggggaaaactgctgtttttgtt
ctatcaactttgcagcagattgaccccgtagcaggccaagtttctgcactcgttctttgc
catactagagaattagcttaccagatctgtcatgaatttgagaggttcagtacgtacttg
cctgatctcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaaagatttg
ctgaaaaatgaatgccctcacattgttgttggaacccctggaagaatattggcattggca
agggataaagacctctccttgaagaatgtgaggcattttatccttgatgaatgtgacaaa
atgcttgaatccctagacatgaggagagacgtgcaagagattttcaagatgacgccgcat
gataagcaagtgatgatgttttctgcaacactcagcaaagaaatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgacgatgaagccaagttgaccctgcat
ggactagtacagcactacatcaagttaactgaggcagagaaaaaccgcaagttgaacgac
ctccttgatgcactggacttcaaccaagttgttatattcgtcaagagcgtgagcagagca
gctgagttgaacaagttactttcagagtgtaattttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcataaccggatt
cttgtggccacagatttggtcggcagaggaatcgacattgagcgtgttaacatcgttatc
aactatgacatgccagattctgctgacacttatttacacagggttggcagagctggcagg
tttggcaccaaaggtctggcaattacatttgtttcatctgcagcggactctgatgttctt
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgatact
gccacatacatgccgtcttaa
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