Prunus avium (sweet cherry): 110764218
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Entry
110764218 CDS
T05161
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110764218
09123 Folding, sorting and degradation
03018 RNA degradation
110764218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110764218
03041 Spliceosome [BR:
pavi03041
]
110764218
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110764218
mRNA degradation factors
5'-3' decay
Lsm complex
110764218
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110764218
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
110764218
NCBI-ProteinID:
XP_021822824
UniProt:
A0A6P5T6N6
LinkDB
All DBs
Position
Unknown
AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacagtcttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcactggtggtagacaagtaacagggactctaaaaggatatgaccagttgtta
aaccttgtcctagacgaagcagtagagtttctaagagattctgatgatccattgaagact
acggatcagaccaggcgccttggcctaatagtttgtaggggaactgctgtaatgcttgtg
tcgccaacagatggtacagatgagattgcgaacccttttagccagccagatggtgcctaa
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integrated database retrieval system