Prunus avium (sweet cherry): 110764711
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Entry
110764711 CDS
T05161
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110764711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pavi04121
]
110764711
Enzymes [BR:
pavi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
110764711
Ubiquitin system [BR:
pavi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110764711
Multi subunit type E3
ERAD complex
110764711
LMBR1L-GP78-UBAC2 complex
110764711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_16
zf-RING_5
zf-C3HC4_4
E3_UbLigase_EDD
zf-RING_Vps41
zf-HC5HC2H
Endonuclease_7
zf_RING_Vps8_fungal
Kazal_1
PHD
FANCL_C
U-box_ZFPL1
Motif
Other DBs
NCBI-GeneID:
110764711
NCBI-ProteinID:
XP_021823416
UniProt:
A0A6P5T8E8
LinkDB
All DBs
Position
Unknown
AA seq
591 aa
AA seq
DB search
MGLRYIAISAVCTAISFAGLQLWTETSLVKLKSDGLIGDNLIPAANFGHVVDLLLGSYAT
VGLLANFVLNAFVLLVLFLKTIFFVELYPSETRKLVERLINYVIYKGTFLPLVIPPTIYH
AGLWSVWLIVLCSLKMFQALARDRLERLNASPSATPLSYFRVYSVLLLVLTVDVFWIRLC
VVIYKTLGLSMFLLLLFEPFSIAFETLQAILVHGFQLLDIWIHHSAWNSENCERSKLFDT
SAAGLLLEWKGSLTRNLGFVLDMATLLMALGHYVHIWWLHGMAFHLVDAILFLNIRVNIC
ALLSAIIKRIKGFVKLRKALGALHAALPDATSEELRTYDDECAICREPMAKAKKLHCSHL
FHLACLRSWLDQGLNEIYSCPTCRKPLFVGRTENEVNPRNEETSNDEQLARQISSGLDRQ
NSSGHTIPTGAFPNQAQNLTEGGPWRGAGLDSNWLHNWPSEGVDGAGPSTAIGSVGLGRV
QMMMRHLASVGETYAQTALEDGTWSLWPMSPSQVAATGPSNPPADDGRYHGGARSLHMRT
PSRTVNDNLANILAMAETVREVLPHMPDDLIFQDLQRTNSVTVTVNNLLQM
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgcggtatatagccatctctgcagtatgtacggcgataagctttgcgggtctc
caattgtggacagaaacttctttagttaaactaaaatcagatggactaattggagataat
ttgattcctgcggccaattttggacatgtagttgatctgcttttgggttcttacgccact
gttggactgctggcaaattttgtactcaatgcatttgttttactcgttctatttctcaag
actatattctttgtggagttgtatccttctgaaactcgcaaattggtcgaacgccttatc
aattatgttatttacaagggcacgtttctaccactggttattcctcctacgatatatcat
gcaggcctgtggtcggtctggttgattgttctttgttctctaaagatgtttcaagctttg
gctagagatcgacttgaacgattgaatgcatctccttctgccacaccattgtcatatttt
cgtgtgtattcagtgttattgttggttctcactgttgatgttttctggataaggctgtgt
gtggtgatatataaaactctgggtttatccatgtttctcttgttattatttgagcctttc
agtattgcatttgaaacactgcaggctattttggtgcatggatttcagttacttgatata
tggatccatcattcagcatggaacagtgaaaattgcgagaggtccaaattatttgataca
tcagctgccggtttattgttggaatggaaaggcagtcttactcggaatttgggctttgtc
ctagacatggcaacattgttaatggcacttggtcactatgtgcatatttggtggcttcat
ggcatggcattccatctagtggatgcaatcctttttctaaacatacgtgtaaatatttgt
gccttgctaagtgcaattataaaacgtataaaagggttcgtcaaactaagaaaagccttg
ggcgctcttcatgcagcacttccagatgcaacatctgaagaactacgaacatatgatgat
gaatgtgcaatttgtagggaacctatggctaaggctaaaaaactacactgtagtcacctt
tttcatcttgcgtgcttgagatcttggttggaccaaggtttgaatgagatatattcatgt
ccaacttgtcgcaagccactttttgtaggcagaactgaaaatgaagtaaatccccgcaat
gaagaaacttcgaatgatgagcagcttgcgcgtcaaataagttcaggacttgatcgacaa
aatagttctggacatacaattcctactggtgcgttccccaatcaggctcagaatcttaca
gaaggtggtccatggaggggtgcaggactggattcaaattggttgcataattggccaagt
gagggagttgatggggcaggtccttctactgctatcggatctgttggactggggagagtt
cagatgatgatgaggcatcttgcatctgtcggagaaacttatgcccagacggcccttgaa
gatggtacttggagcctatggcctatgagtccctctcaggttgctgcaactggtccatct
aatcctcctgctgatgatggaagataccatggaggagcacggagcttgcatatgagaact
ccctcacgtactgtgaatgacaacctagcaaacatacttgctatggctgagacagtgagg
gaagttctgcctcatatgccggatgacctaattttccaggatttgcagcgaacaaattct
gttacggttactgtgaataatcttctccaaatgtga
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