Prunus avium (sweet cherry): 110765916
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Entry
110765916 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110765916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110765916
03012 Translation factors [BR:
pavi03012
]
110765916
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110765916
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110765916
Translation factors [BR:
pavi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110765916
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
R3H
OB_NTP_bind
Ank_5
AAA_19
Ank_2
HA2_N
ATPase
ResIII
nSTAND3
AAA_22
AAA_23
Rad17
NPHP3_N
T2SSE
AAA_7
Ank_3
Motif
Other DBs
NCBI-GeneID:
110765916
NCBI-ProteinID:
XP_021824850
UniProt:
A0A6P5TCR4
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MAKKNRGGEQQNSKVTESMRNRIAQLLTRFKSADDEVYTFEAGLSNLDRAEVHQQCRKMG
MKSKSKGSGKKRVVSVYKPKKKAAASDVIPKLTHLTFSGVTKEVLRDLFMRYPPGDEVGR
EMYGTNSNENVKAKRKKDSMFCKPSMTKAEIAKKVESLASRIKNSDKLRKITEEKSKLPI
TSYRDVITSAVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISAAS
VAERISKERGGNVGEDIGYKIRLESQGGRHSSIVLCTNGILLRLLVSRGTGRSKAGDSNK
ETKQDDNDITHIIVDEIHERDHHSDLMLAIIRDMLSSHPHLHLILMSATVDAERFSHYFG
GCPIIRVPGFTYPVKTFYLEDVLSILKSVENNHLNTAVGLQNEDPDLTQEFKLVLDEAIN
LAWSNDEFDPLLELASSERTRKVFNYQHSLTGLTPLMVFAGKGRTTDVCMLLSFGADCQL
RANDGATALELAEREEQRETAEILKVHIENALSNSMKEQLLIDRYLQYFNPENVDFVLIE
QLLRKICSDSNDGAILVFLPGWDDIKKTQERLLMNPYFRNTSKVLIISLHSMVPSNDQKM
VFKRPPPGCRKIVLSTNMAETAITIDDVVYVIDSGRMKEKNYDPYNNVSSLQSSWVSKAS
AKQRRGRAGRCQPGICYHLYSKVRAASLPDFQVPEIRRMPIEGLCLQVKLLDPDCNIEDF
LIKTLDPPRSETIHNAVAVLQDIGALSLDEKLTVLGEKLGSLPVHPLTSKMLFFSILMNC
LDPALTLACATDFKDPFSLPMLPDDRKRAAAAKYELASLYGGHSDQLAVIAAFDIWKTAK
KRRQEELFCSQYFVSSSTMHMLSRMRKQLQAELNRHGFIPDDVSRCSLNAHNPGILRAVL
VAGLYPMVGRLVPARKKMKRSVVETPNGVKVCLNNHSMNYKLAKVNSDDRPLIMFDEITR
GDAGVMNIRNCTVIGPLPLLFLSTEISVAPSNNDDDDGYVDEGSDVDDNEDESDEDAMEI
DGKSGGQHKDKIMSSPDNSVTVIVDRWLQFGSKALDVAQIYCLRERLSAAILFKVTHPRK
VLPPGLGASVYAIACALSYDGLSGISIPKESEESPTSVENETVTEDSVEPLQDCYLHKSI
MCDILRDDAHGSNDINEMHCYFLRSCAPAVNAAAHHRPLGTDILAANGKVRFYVIGNGAA
KLRDPSSHSVQPPLDSAPITAHQKPPSQGPNLVGNGPSTDASDGPRGESPLQRKKRRNRG
REQSSLNGI
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaacagaggcggcgaacaacaaaacagtaaagttacagaaagcatgagg
aaccgaatagctcaattactcacccgcttcaaatccgccgatgacgaagtttacacattt
gaggccggtctctcgaaccttgaccgtgctgaagtgcatcaacaatgcaggaaaatgggt
atgaaatccaagagtaaagggagtgggaaaaaacgtgttgtgtctgtttataaacctaaa
aagaaggccgcagccagtgatgttattccaaagctcactcatctgacattttccggagtc
acaaaagaagtattgagggacttgttcatgcgttacccacccggtgatgaagtgggcaga
gaaatgtatgggacaaatagtaatgagaatgtgaaagccaagcggaagaaagacagtatg
ttttgcaagccttcgatgaccaaggcagaaattgcaaagaaagtggaatcacttgcttct
agaataaagaattccgataaattgagaaagatcaccgaagagaagtctaagcttccaatt
acatcctacagggatgtcattacatcagcagttgaatctcatcaggtaattcttatatct
ggtgagactgggtgcggaaagaccacacaggtcccacagtttattttggaccatatgtgg
ggtaagggggaggcatgtaaaatagtgtgcacgcaacctcgacgtatctcagctgcatca
gttgctgagagaatctctaaggaaagaggaggaaatgttggagaggatattggatacaag
atacggttggaaagtcaaggtggcaggcactcatcaattgtgctctgcacaaatgggatt
ctgttgaggttgttagtgtccagaggcactggtagatcaaaagcaggtgactcaaacaaa
gaaaccaagcaagatgacaatgacataactcacattattgtggatgaaattcatgaaagg
gatcaccactcagatcttatgctggcaattataagagacatgctttcttcacaccctcat
ctacatctgatactgatgagtgcaactgttgatgctgaacggttttcacattattttggt
ggatgcccaattatccgtgtccctgggttcacttatcctgtcaaaactttctatttggag
gatgtactttctatcctgaaatccgtagaaaataatcaccttaatactgcagtaggttta
cagaatgaagatcctgacttaacacaggaatttaagcttgttctagatgaagctattaat
ctggcttggtcaaatgatgagtttgatccccttctagaattggcgtcttctgaaagaact
cgcaaagtctttaattaccagcattctttaaccggacttacgccgttaatggtgtttgct
ggaaagggtagaaccacagatgtttgcatgctgctatcttttggtgcggactgccaatta
cgggccaatgatggagcaactgcgttggagttggctgaacgggaagagcagcgagaaact
gctgagatattgaaagtgcatattgaaaatgctctttctaactctatgaaagaacaactg
ttaattgatagatatctccaatattttaatcctgaaaatgttgattttgttcttattgag
caattactaaggaaaatttgtagtgattcaaacgatggagccatccttgtgttccttcca
gggtgggatgatataaaaaaaacccaggagagattactcatgaacccgtatttcagaaat
acttctaaggttttgataatatctctacattcgatggttccatctaatgaccaaaagatg
gtcttcaaacgcccccctcctggttgccgaaaaattgttctttcaactaatatggctgaa
actgccatcaccattgatgatgtcgtttatgttattgatagtggccggatgaaagaaaaa
aattatgatccttacaataatgtatcaagtcttcaatcttcctgggtgtcaaaagcgagt
gccaagcaacgaaggggccgtgctggtcgttgtcagcctggaatctgttatcatctttat
tctaaagttcgagcagcttcattgccagattttcaggtgcctgagattaggagaatgcca
attgaagggctttgcctgcaggtgaagttacttgatccagattgcaatatagaagatttc
ttgattaagacattggatcctccacgttccgagaccatacacaatgcagttgctgttctt
caagatattggggctttgtcacttgatgagaaacttacagtacttggggagaagctaggt
tctctacctgttcatccattgacgagcaagatgcttttcttttctatactgatgaactgt
cttgacccagctttgactctggcatgtgctactgacttcaaggatccattttccctgcct
atgttacctgatgataggaagagagccgctgctgctaaatatgaacttgcttcattgtat
ggtgggcatagtgatcagctagcagtcatagcagcatttgacatatggaagactgctaaa
aaacgacgtcaagaggaactgttctgttctcaatactttgtgtcttcaagtacgatgcat
atgctatctcgtatgcgcaagcagctccaggcagagctaaatcggcatggttttattcct
gacgatgtatcaagatgtagcttgaatgcacataacccaggtatactccgtgctgttctt
gtggccggtttgtatccaatggtggggagattggttcctgctcgcaagaagatgaaacga
tctgttgtagaaactcctaatggggttaaagtttgtttaaacaatcactctatgaattat
aagttagctaaggtcaacagtgatgatcgtccattgattatgtttgatgagataacccgt
ggggatgcgggcgtgatgaacatacggaactgtactgttatcgggccacttccgttatta
tttctttcgacagaaatttctgttgctccatctaacaatgacgatgatgatggttacgtt
gatgaggggagtgatgtggatgacaatgaggatgaaagtgatgaagatgcaatggagata
gatggcaagtcaggtggacaacacaaggataaaattatgtcatctcctgataattcagtc
acagttatagtggatcggtggcttcaatttgggtcaaaagctctggacgttgctcagatc
tactgcttgagagaacgtttatctgcagcaatcttattcaaagttacacatccaaggaaa
gttttgcctcctggtcttggggcctcagtttatgctatagcctgtgctctatcgtatgat
ggtctatctgggatctcaattccaaaggaatccgaggagtctccgacttcggtggaaaat
gaaactgtgactgaggactctgttgagccccttcaagattgctacttacacaaatcgatt
atgtgcgatatattaagggatgatgcacatgggagcaatgacataaatgaaatgcactgt
tacttcctcagatcatgtgctcctgccgtcaatgcagcagcacaccataggccactaggc
acggatatacttgctgctaatggaaaagtaaggttttatgtgataggaaatggggcagca
aagttgcgtgacccatcaagtcacagtgttcaaccaccgcttgattctgctcccatcacc
gctcaccagaagcctccatcacaaggtccaaatttagttggtaacggtccaagcactgat
gcatcagatggtccaaggggagagtcgccactgcagaggaagaagcgtaggaataggggt
agagaacaatcatctttgaatgggatctaa
DBGET
integrated database retrieval system
