Prunus avium (sweet cherry): 110765999
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Entry
110765999 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110765999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110765999
03012 Translation factors [BR:
pavi03012
]
110765999
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110765999
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110765999
Translation factors [BR:
pavi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110765999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
Myosin_head
AAA_23
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
110765999
NCBI-ProteinID:
XP_021824949
UniProt:
A0A6P5TCT5
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MRSSRVAVGFLLKAVSNKNNACYPFYRTHTRCLALLLLHSSSSSSSISNGGFLVSKRGFC
GYAAEQFSDDEYECDFEGQKASSSVANIDEWKWKMSLLLRSEKDQEIVSRDKRDRRDYEQ
ISNLAKRMGLYCEIYGKVVVASKIPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQEHL
DRVQLNSGKFTDNRGDSEHLDQRENAIPDENADSLLDGSVMEKVLQRRSLRMRNMQRAWQ
ESPEGKKMLDFRKSLPAFKENERLLQAIAQNQVIVISGETGCGKTTQLPQYILESEIESG
RGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFGGAPTIHIPGFTYPVKAHFLEDVLEMTGYKLTSFNQIDDYGQDKMWKTQKQLVPRKR
KNQITALVEDALNKSSFESYSPRARDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFGRPPPNVRKVVLATNM
AEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECFH
LYPKCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVPSIGEFLSAALQPPEPLAVQNAIGF
LTSIGALDDNENLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRDPFLL
PQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTM
DDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGSLNHGVQ
AGHLRMLEGYIDFFMDPSLVDCYLKLKEELNELIQKKLQDPSLDIHKEGKYIMLAVQELV
SGDQCEGRFVFGRDSKRPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKSN
EFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSRGEEDNSPPDVTDNMLK
LLGKRRRSKRQSG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagttcgagagtagcagtgggttttcttctcaaggcagtctccaacaagaacaac
gcttgttatccattttaccgcacacacactcgttgcctcgctttactacttctgcactct
tcttcttcttcttcctcaatctccaatggcggattccttgtttccaagcgtgggttttgc
ggctacgctgccgagcagttctctgacgacgagtacgagtgcgatttcgagggccaaaag
gcatcatcttcggtggcgaacattgacgagtggaaatggaaaatgagcttgctgttgcgc
agcgaaaaggaccaagagattgtatccagagataagagggataggagagactatgagcag
atatcgaacctcgccaaaaggatgggactttattgtgaaatatatgggaaagtggtggtt
gccagcaagattcctcttccaaactacaggccagatttggatgataagcggccacaaagg
gaggtggttatccctcttggtttgcaaaggagggtagagggtttgctgcaggaacacctt
gatcgagtccagttaaactctggaaagttcaccgacaatagaggtgactctgagcacctt
gatcagcgtgaaaatgcaattcctgatgagaatgccgattctcttctagatgggtctgtc
atggagaaggtgcttcagaggaggagtttgcggatgcgtaatatgcaaagagcttggcag
gaatcacctgaaggcaagaagatgctagacttccgcaaatcactaccggctttcaaggag
aatgaaaggttgctgcaagcaattgcacaaaatcaggtaatagtgatttctggggagact
ggatgtggtaagaccactcaacttcctcaatatatactagagtcagaaatagaatctggc
cgtggagcattctgtagcatcatttgtacacagcctcgaagaatatctgctatggctgtt
gcagaaagagtgtcagcagagaggggagagcctcttggtgaaacagttggttataaagtt
cgattggagggaatgaagggaaaaaatacccatctgcttttctgtaccagtggtatttta
cttcgacgtctgttgagtgatcgcaacctgaatggtataacccatgttttcgttgatgag
attcatgagcgaggcatgaatgaagacttcttattgattgtgttgaaggatctgcttcca
cgccgtcgggatttaagattggttttaatgagtgccactctgaatgctgagctattttca
aattattttggaggagcaccaacaattcacattccgggctttacatatccagtgaaagca
cactttttagaagatgtacttgaaatgactgggtataagttgacctctttcaaccaaatt
gatgattatggccaagacaaaatgtggaaaacacagaagcagttagtgcctcgaaaaagg
aaaaaccagattactgctctagttgaggatgctcttaataaatcaagctttgagagttac
agccccagggcgcgtgattcactatcatgttggacacctgattgcataggatttaattta
atcgaggcagttttatgccatatatgtcgaaaggaacgaccaggtgccgttctagtgttc
atgactgggtgggaggatatcagctgtttgagggatcaacttaaagcccatcccctttta
ggtgatcctaacagggttttgcttctaacttgccatgggtcaatggcgacatccgaacag
aaactcatatttggaagaccacctcctaatgttcgtaaagtagttcttgctacaaatatg
gcagaagcaagcattacaatcaatgatgtggtttttgtcgttgattgtggaaaagcgaaa
gagacctcatatgatgctttgaataatacaccttgcctactaccttcttggatatcgcaa
gcatctgctcggcaaagaaggggcagggctggtcgggtgcagccaggcgaatgcttccac
ctttaccccaaatgtgtttatcatgcttttgcggaatatcaacttcctgaacttctcaga
actcctttaaactctctctgcttgcaaattaaaagtctgcaggttcctagtataggggaa
ttcttgtcagctgccttgcagccaccggaaccacttgctgttcaaaatgccattggcttt
cttacgtcgattggggcattagatgataatgaaaatttgacaagtctcggaaaatatttg
tcaatacttccagtagatcccaaactagggaaaatgctgattatgggtgccgtgtttcat
tgctttgatcctgttcttacaatagtgtctgggcttagcgtcagagatcctttccttttg
cctcaagataagaaggatttagcagggacagcaaaatctagattctctgcaaaagattac
agtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgcagaacgagaagga
tcagcgtatgaatactgctggagaaatttcctttctgcccaaacacttcaggctattcat
tctcttcggaagcagtttaactacattttgagagatgctggcttggtggatgcagatgca
agcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatcatatgttctgga
cttttccctggaatagcgtctgtagtgcaccgagagacatccatgtctttcaaaacgatg
gatgatggccaggttttactatatgctaattctgtgaatgcgcgttaccaaacaattccc
tacccctggttggtctttggtgaaaaagtaaaggtcaatactgttttcatacgtgattcc
actggtgtatccgattcaatactgatcctttttggtggttccttgaaccatggggtccag
gctgggcatttgagaatgttggaaggttatattgacttcttcatggatcctagtttggtg
gactgctatttgaagcttaaggaagaacttaatgagcttattcaaaagaagcttcaagat
cctagccttgatattcacaaggaagggaagtacattatgcttgctgttcaagagctagta
tccggagatcaatgtgaaggaagatttgtatttggccgtgacagcaagaggccaaaggag
tctggtgataacagcagattcacaaaagacggaaccaatcctaagagtttgctacaaact
ctgttgatgagagcaggacactccccaccaaaatataaaacaaagcaccttaagtcgaac
gaattcagagcattggtggagttcaagggcatgcaatttgttgggaaacccaagaaaaat
aagcagcttgcagaaagggatgctgctatagaagcactggcctggttgactcacacctca
gacaatagtcgtggtgaagaggacaactccccacctgatgtcactgacaacatgctgaaa
cttcttgggaaacgcagaagatcaaaacgtcagtctggttga
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integrated database retrieval system
