Prunus avium (sweet cherry): 110766738
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Entry
110766738 CDS
T05161
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03020
RNA polymerase
pavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110766738
09124 Replication and repair
03420 Nucleotide excision repair
110766738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110766738
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110766738
Enzymes [BR:
pavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110766738
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110766738
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110766738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
110766738
NCBI-ProteinID:
XP_021825796
UniProt:
A0A6P5TF22
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MDEEPEYDDQQYNDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQPDFAETTYRIKFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVSKSIVKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLARTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVSREKRIKYAKEILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRKLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAQGQAASRYTRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL
HSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKDQKKKGA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagcccgagtacgacgaccagcagtacaacgacgacgacgaagatgaaatc
acgcaggaggacgcctgggccgtcatctcagcctacttcgaagagaagggtttggtgcgc
caacagctcgactcattcgacgagttcattcagaacacaatgcaggaaattgtcgatgag
tcggccgatatcgagattcgccccgagtcgcagcacaacccgggccaccagcctgatttc
gccgagactacatataggattaagttcggtcagatttatttgagtaagcccatgatgacc
gagtccgatggagaaactgcaaccttatttcccaaagctgccaggttgagaaatctaacg
tactcagcacccttgtatgtggatgtctcaaagagcattgtaaagaaaggacatgatggt
gaagaagtcaccgaaactcaggatttcaccaaagtattcattggaaaggttcctataatg
cttcggtctagttattgcacgttgtaccagaattccgaaaaagatttaacagagctggga
gagtgtccatatgatcaaggtggatattttattataaatgggagtgaaaaggttctgatt
gcccaagagaagatgagcaccaatcatgtctacgtgttcaaaaagaggcagcctaacaag
tatgcctatgtggcggaagttcggtctatggcggagtcccaaaacagaccgcccagtaca
atgtttgtgcggatgcttgctcggactagttctaaagggggttcttctggacaatacatc
cgtgctactcttccatacattcgagctgaaattcctattattattgtgttccgagctctc
gggtttgttgctgataaagacatattagagcatatatgttatgacttctctgatactcag
atgatggagttgcttagaccttctctggaagaagcatttgtgattcaaaatcaacaggtt
gcactcgactatattggaaaaagaggtgcaactgttggtgttagtagagaaaagaggatc
aagtatgcaaaagagatccttcaaaaggaaatgcttccacatgttggtgttggagaattt
tgtgagacaaagaaagcttactattttggatatatcattcacaggcttctactgtgtgca
cttggtcggagggcagaagatgatagggatcattatggcaacaagaggctggatcttgct
ggtcccttactgggaggcttgtttcgaatgttattcaggaagttgactagggatgtgaga
ggttatgtgcaaaagtgtgttgataatggaaaggaacttaacctgcaatttgccatcaaa
gctaaaacaatcactagtggcctcaaatattcacttgctactgggaactgggggcaagca
aatgcagctggtacaagggctggagtgtcacaggtgttaaatcgtttgacatatgcgtcc
accttgtcacacttgagaaggctaaattctcccatagggcgtgaagggaaattggccaaa
ccacggcagttgcataactcacagtgggggatgatgtgcccagctgaaacacctgaagga
caagcatgtggacttgtaaagaatcttgcgttgatggtatacatcacagtaggatcagct
gcatatccaatattggaatttttggaagaatggggcacagagaattttgaggaaatttcc
cctgcagttattccccaagccacgaaaatttttgttaatggctgttgggttggtatacat
cgtgatcctgaaatgttggtgaaaacattaagaaagctaaggcgacgggttgatgtcaat
actgaagttggggttgtcagagatatccgtcttaaagaattgcggatatatactgattat
ggccgttgcagtcgtccattattcattgtggacaaacaaaggcttctcataaagaagaaa
gatattcatgcattacagcagagggaaaaccctgaagatggtggctggcatgaccttgta
gcaaagggatttatagaatatattgatacggaagaagaggagactacaatgatttccatg
acaattaatgatcttgtacaagcaaggctcaatcctgaagaggcatattctgacacctac
actcattgtgaaattcatccatcgcttattttgggtgtttgtgcttcaattataccattt
cccgatcataatcagtctccacgtaatacgtatcaatctgctatgggcaagcaagcaatg
ggaatttacgtcaccaattatcagttccgaatggatacactggcgtatgttctgtactac
cctcagaagccccttgtcactacacgagccatggagcatcttcatttcaggcagcttcca
gctggcatcaatgctattgttgccatttcttgctattctggttataaccaggaagattct
gtcattatgaatcagtcctctatagaccgtggattcttccggtcaatattcttccgctct
tatagggacgaggagaaaaagatggggacccttgtcaaagaggatttcgggcgtccagac
agagcaaataccatgggcatgcggcatggttcttacgacaagttggatgatgatggtctt
gcacctcctggaactagggtttcaggtgaagatgttatcataggaaagaccactcccatg
gctcaggatgaggcacaagggcaagctgcttcacgatacacacggcgtgaccatagcata
agcttacgccacagtgaaacagggattgtggatcaggttctactgacgactaatgctgat
gggttgaggtttgtgaaagtaagggtgagatctgtccggataccacagattggtgataaa
tttagcagtagacatggacagaaggggacagtgggtatgacttatacacaagaagacatg
ccatggactgtggaaggggtcacccctgatattattgtgaacccacatgctattccttct
cgaatgaccattggtcagcttattgagtgtatcatggggaaggttgcagctcacatgggg
aaggaaggagatgcaactccctttacggatgtgactgtggacaatattagcagagctctt
cacagctgtgggtatcaaatgcgtgggtttgagaccatgtataacggccacacaggcagg
cggcttagtgctatgatattccttggccccacatattaccagaggctgaagcatatggtt
gatgacaagatccattcccgtgggcggggtccagtacagatcctcacaaggcagcctgct
gagggacgatctcgtgatggtggtctgcgattcggagaaatggaacgagattgcatgatt
gctcatggcgctgctcattttctgaaagagagattgttcgaccagagtgatgcatatagg
gttcatgtctgtgagcgttgtgggttaatagctattgcaaatctcaagaagaattcattt
gagtgcagaggttgcaagaataaaactgacattgttcaggtatacattccctatgcttgc
aagctgctcttccaagagcttatgtccatggctatagcaccaagaatgctcacaaaggac
atcaagcccgccaaagaccaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
