Prunus avium (sweet cherry): 110766805
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Entry
110766805 CDS
T05161
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03022
Basal transcription factors
pavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110766805
09124 Replication and repair
03420 Nucleotide excision repair
110766805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110766805
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110766805
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110766805
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110766805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
110766805
NCBI-ProteinID:
XP_021825880
UniProt:
A0A6P5TFV4
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MPQVRIIAKNFMDMVAALPAMKLDKLYENAFICEAILRSLPPLAKKYVLQMLCIEVPVTA
KSMEEWVLPDGVSKHRVAIDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLLYGVVL
PREPMPSNVTVRLPSSEDLEAFALEQWECFLLQLINSSQIERPSNISSSMMKIFQRGLLS
QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDSADLISFLLELSFHVTGE
AYNINTLTEVQKNTIKDLADLGLVKLQQGRKDSWFIPTRLATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITADQIISFL
QQNAHPRVAERVPSVPENVTDQIRLWETDLNRVEMTPAYHYDGFPSRDLFEGASDFARGY
NALLWEDPDDSKKMSLVVKAENHVHMREYLSRQRQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaggatcatagcgaagaatttcatggacatggtggctgccttgcccgcc
atgaagctcgacaagctctacgagaacgcattcatctgcgaagccattctcaggtctctg
ccaccgctagccaagaaatatgtcttacaaatgctatgcatcgaagttccagtgactgcc
aagtcaatggaggagtgggtgctgccggatggggtctccaaacatagagttgctattgat
cggctaattcagttgagaattttcactgaaactgttgacaggaagagagaaacaacttac
acattaaatcctatatttcagaccaatctcaagaagcttttgctatatggtgtagttttg
ccaagagaaccgatgccttcgaacgttacagtgaggctcccaagctcagaggatcttgag
gcttttgccctagaacaatgggagtgtttcttgctgcaacttatcaactcatctcaaatt
gaaaggccatcaaacatcagttcatctatgatgaaaattttccagcggggtcttttgagt
caaagagataaagaagctccaagattaactgaaagtggtttccagttcttgctgatggat
acaaacgcacaactatggtacatcatcagagaatacatctctaactcggaggagcgtggg
gtagattctgcagatttgatttcattcctgctggagcttagttttcatgttacaggcgag
gcatataacataaatacattgactgaggttcagaagaatacgatcaaggatcttgcagat
ttaggattggtcaaacttcagcagggtcggaaagacagttggtttatacctacgagatta
gctactaatctttcagtgagcttgacagactcatcatcaaggaaacagggatttgtggtt
gtggaaacaaacttcaggctgtatgcctactcaacatctaaattacattgtgaaatttta
cgtcttttctcaagggtagaatatcaacttccaaatcttatagttggagcaataacaaaa
gaaagtttgtatagtgcttttgaaaatggcatcactgcagatcagataatttcttttctt
cagcagaatgcacatccacgtgttgcagagagagtaccatctgtacctgagaatgtcaca
gatcagattaggctgtgggaaacagatctgaatagggttgagatgactccagcgtatcat
tatgatggatttccatccagggatctctttgagggtgcttctgactttgcacgaggctat
aatgctctgctatgggaggatccagatgattcaaagaagatgtctttagtggtcaaggca
gaaaaccacgtccacatgcgagaatatcttagccgtcaaaggcagtag
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