Prunus avium (sweet cherry): 110767814
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Entry
110767814 CDS
T05161
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110767814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110767814
Spliceosome [BR:
pavi03041
]
Complex B
Other components
Prp19-related factors
110767814
Complex C
110767814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
110767814
NCBI-ProteinID:
XP_021827161
UniProt:
A0A6P5TJB2
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIGSNDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLDERIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQDSEGTAEARQQAVAHSGLLPRAVISQQQNQLQDQPAPLHYYNMPPPPSHERSFY
PSMDPQRMGAIVPSQEGAPSGPTGSGENNSSAERQQRSQHYAFQNMPQPHGQYRPQFYPP
PYGHMPPPPAPYQQYPPQYHAGVPPPPSLPMNQQYQHSATPGPAHSGSTSSASAPSNSGP
SGSTPSGSGSAQTWSSQQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggctgctcaggaatgtggaggcggatggttgggaacgttcagactttccc
atcatctgcgagtcatgcttgggcgacaatccctacgtccggatgacacgagctgattac
gacaaggagtgcaagatttgcactaggccattcaccgttttcaggtggagacctggtcgt
gatgctcgatttaagaagtcagagatttgtcagacgtgcagtaagttgaaaaatgtttgt
caagtttgcctcttggatctggaatacggcttgccagttcaggttcgagatactgctctg
gccattggttccaacgatgccattccaaagagtgatgtaaatagggagtttttcgctgag
gagcatgaccggaaggctagagctggtatagactatgaatcttcgtacggaaaggcacga
cccagtgacactattctgaagcttcaaagaacaacaccctattacaaaaggaacagagca
catgtttgcagtttctacattcggggtgagtgcacaagaggtgctgagtgtccttacagg
cacgaaatgcccataactggggagttgtcacagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcgatgaagctgcttaacaaggctggagagatgccctccctggaa
cctcctgaggatgaaagcataagaactctatacgtgggtgggcttgatgagagaatttct
gagcaggatttgagggatcaattttacgctcatggtgaaatagaatctgttaggatggta
ctccaacgagcatgtgcttttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaataaactggtaataaaaggtttgagattgaagttaatgtggggtagg
ccccaagcaccaaaacaggactcagagggcacagctgaagctaggcagcaggcagtggct
catagtgggttgttgcctcgagcagtcatatctcaacagcagaaccaattacaagaccaa
cctgcaccactgcactattacaacatgccacctccaccctcacatgagagatcattttat
ccatcaatggatcctcaaagaatgggggctatagttccatcccaggaaggggctcctagt
gggcctacagggtcaggcgagaacaattccagtgcagaaaggcagcaacgaagtcagcat
tatgcttttcaaaacatgcctcaaccacatggccaatatcgtccgcagttttatcctcca
ccctacgggcatatgcctcctccaccagcaccgtaccagcaataccctccgcaatatcat
gctggagtgccgccgccaccatccttgccaatgaaccaacagtaccagcattcagcaaca
ccagggcctgcacactcaggttctacatcatcagcatctgcaccatcaaattctggacct
tcggggtccacaccatctggttctgggtctgcgcagacatggtcatcacagcagtga
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