Prunus avium (sweet cherry): 110767818
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Entry
110767818 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110767818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110767818
03009 Ribosome biogenesis [BR:
pavi03009
]
110767818
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110767818
Spliceosome [BR:
pavi03041
]
Complex A
U1 snRNP components
U1 related factors
110767818
Complex B
110767818
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110767818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110767818
NCBI-ProteinID:
XP_021827164
UniProt:
A0A6P5TJ41
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRKSDSGFGVTGYGGSARSSSSKKDYDGAESPRKFDLDGLTPFEK
NFYVESPEVERMSEKEVEEYRQRREITIEGRDVPKPIKSFHDTGFPEYVLEEVTKAGFVE
PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAPT
RELAVQIQQEATKFGSSSKIKSTCIYGGVPKGPQVRDLQRGVEIVIATPGRLIDMIESHH
TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYN
PYKVIIGSPDLKANHAIRQIVDIITENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIALLEEAGQKVSPELAAMGRGA
PPPPSGHGGFRDRGRGYGGGRPWN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccggcgaccctacttcttaccgtgaccggaaaagtgat
tcggggtttggtgtgaccggctacggtggctcagcacggtcttcgtcaagcaagaaggat
tatgatggtgctgagtcaccgaggaaatttgatttggatggattgacacctttcgagaag
aatttctatgttgagtcacctgaagtggaaagaatgtcggagaaggaggttgaggagtat
aggcaacggagggaaattactattgaaggccgtgatgttccaaagccgatcaagagtttc
catgacactgggtttccggaatacgttttggaagaagttacaaaggctggatttgttgaa
cctacaccaattcaagctcaaggatggccaatggctttgaagggtcgtgatctcattggt
attgctgaaacaggatcagggaagacgctagcctacctgttgcctgcaattgtccatgtc
aatgcccagccaattctatctcctggagatggcccaatagtattagttttagctccaacc
cgtgagctcgctgttcaaatccaacaagaggctactaaatttggttcgtcttcaaaaatt
aaaagcacatgcatatatggcggggttccaaagggacctcaagttcgtgatctgcagaga
ggagttgagattgtaattgctacacccgggaggttgattgatatgatagagtcgcatcat
accaacttgcgaagggtcacataccttgtgttggatgaggctgatcggatgctagacatg
gggtttgacccacagatacggaaaattgtttctcagattcgcccagaccgtcaaacatta
tactggagtgctacctggccaaaggaggttgaacaactggcaaggcagttcctttacaac
ccatacaaagtgataataggttctccagatttgaaagctaaccatgcgatccgccaaatt
gttgacatcattacagaaaatcagaaatataacaaactggtaaagttgcttgaggatatc
atggatggcagcagaatactgatattcatggatactaagaaaggatgtgatcagatcact
cggcagctccgcatggatggttggcctgctctctcaattcatggagacaaaagtcaagca
gaaagggattgggtcctctctgagtttaaagccggcaagagccccataatgactgcaaca
gatgttgctgctcgtggtctagatgtgaaggatgtgaaatttgttattaactatgatttt
cctggatcccttgaggattatgttcaccgcattggccgaactggaagagctggggcaaaa
ggaacagcatacacgttttttacagctgctaatgctaggttcgcaaaggaacttattgcc
ttgctcgaggaagctggacagaaggtcagtcctgaattggcagcaatgggccgcggtgca
cctcctcccccttcaggtcacggcggttttcgagatcgcggtcggggttatggtggaggt
cgtccgtggaactga
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